BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928877
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11620.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1546 0.0
> AT3G11620.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:3669319-3672031 REVERSE LENGTH=1336
Length=1336
Score = 1546 bits (837), Expect = 0.0
Identities = 934/982 (95%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 2 GTTGAATCGCGTGACCGCAAATATGGAGACTCAAAACAAATTGATGAATGAAGCTAAAAG 61
||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||
Sbjct 144 GTTGAATCGCGTGACCGGAGACATGGAGACTCAAAACAAATTGATGAATGAAACTAAAAG 203
Query 62 ACATGTTGATTCCAGATTGTGCAGAGTTTCTGGCTCGATGACGGAGATAATGGAAATTCA 121
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 204 ACATGTTAAATCCAGATTGTGCAGAGTTTCTGGTTCGATGACGGAGATGATGGAAATTCA 263
Query 122 AGCTGAGGATCCCACATTCTATGTATTGTTTATTCCGGGAAATCCAGGAGTTGTGTCATT 181
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 264 AGCTGAGAATCCCACATTCCATGTATTGTTTATTCCGGGAAATCCAGGAGTTGTGTCATT 323
Query 182 TTACAAGGAGTTTTTGGAATCTTTATACGAGTTTCTTGATGGAAATGCTTCTGTAATTGC 241
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 324 TTACAAGGACTTTTTGGAATCTTTATACGAGTTTCTTGGTGGAAATGCTTCTGTAATTGC 383
Query 242 TATTGGGCAAATATCTCACACGAGCAAGGACTGGGAATCTGGGAGGCTATTTTCGTTTCA 301
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 384 TATTGGGCAAATATCTCACACGAGCAAGGACTGGGAGTCTGGGAGGCTATTTTCATTTCA 443
Query 302 AGAACAAATTGATCATAAGATTGATTTTATCAGACAGGAGCTGGAGAGCGTGAAAGTTCC 361
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 444 AGAACAAATTGATCATAAGATTGATTTTATCAGACAGGAGTTGGAGAGTGTGAAAGTTCC 503
Query 362 AATAATATTGGTTGGGCATTCTATTGGATCTTATATATCCCTTGAAATATTGAGGAAGTT 421
||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct 504 AATAATATTGGTTGGGCATTCTATTGGGTCTTATATATCCCTTGAGTTATTGAAGAAATT 563
Query 422 CTCGGAGAAGGTGGTATATTGCATTGGTCTGTATCCATTTTTGACTTTGAACCAACAATC 481
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 564 CTCGGACAAGGTGGTATATTGCATTGGCCTATATCCATTTTTGACTTTGAACCAACAATC 623
Query 482 GACAAAGCAATCATTAATTGGGAAACTTGCAGCGTCTTCTGTTCTGTCGGCTACAGCAAG 541
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 624 AACAAAGCAATCATTAATTGGCAAACTTGCAGCGTCTTCTGTTCTGTCGGCTACAGCAAG 683
Query 542 TTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCCAA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 684 TTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAA 743
Query 602 CTCCATTGGAGCTTCATGGTCTGATACTGCTGTTCAAGCTACTTGCACTCACTTGAGACA 661
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 744 ATCCATTGGAGCTTCATGGTCTGATACTGCTGTTCAAGCTACCTGCACTCACTTGAGGCA 803
Query 662 GTATCACACCATGCGCAATGTCCTCTTCATGGCAAAGTCAGAGTTTAGAGAGCTCGCAGC 721
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 804 GTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGCTTGCAGC 863
Query 722 AGAGCCAGATTGGGATTTTATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCAT 781
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCAT 923
Query 782 AGATGATCATTGGGGTCCACTGCAACTCTTTGAAAAGATTTCGAAGCAGGCTCCAGG-TA 840
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | ||
Sbjct 924 TGATGATCATTGGGGTCCACTGCAACTCTTTGAAGAGATTTCAAAGCAAGCTCC-GCATA 982
Query 841 CATCCTTGGCCATCGAGAGGGAAGGTCACATGCACGGATTCTGCTGCACGGTGGCTGGCT 900
| ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 983 CTTCCTTATCTATCGAGAGGGAAGGTCACACGCACGGATTCTGCTGCACGGTGGCTGGCT 1042
Query 901 CAGCATGGGTTGCGCAGCACGTAGCCACTCTGATCAAGAACCGGTTTTCACAGCTCCAGT 960
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1043 CGGCATGGGTTGCGCAGCACGTAGCCACTCTAATCAAGAACCGGTTTTCACAGCTCCAGT 1102
Query 961 AAAGTACATTCCCCTTTCTCTT 982
||||||||||||||| ||||||
Sbjct 1103 AAAGTACATTCCCCTGTCTCTT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5