BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928878
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11630.1 | Symbols: | Thioredoxin superfamily protein | chr... 1550 0.0
AT5G06290.1 | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxired... 704 0.0
> AT3G11630.1 | Symbols: | Thioredoxin superfamily protein | chr3:3672120-3674075
FORWARD LENGTH=1008
Length=1008
Score = 1550 bits (839), Expect = 0.0
Identities = 905/937 (97%), Gaps = 3/937 (0%)
Strand=Plus/Plus
Query 1 TCACAAA--GTGTGTATCATCAATGGCGTCTCTAGCTTCTTCAACTACTCTCATCTCTTC 58
||||||| ||||||| || ||||||||||| | ||||||||||||||||||||||||||
Sbjct 48 TCACAAAGTGTGTGTAGCAGCAATGGCGTCTGTTGCTTCTTCAACTACTCTCATCTCTTC 107
Query 59 TCCATCTTCTAGGGTTTTTCCAGCAAAGTCTTCACTTTCCTCTCCATCTGTTTCTTTCCT 118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TCCCTCTTCTAGGGTTTTTCCAGCAAAGTCTTCACTTTCCTCTCCATCTGTTTCTTTCCT 167
Query 119 TCGAACCCTTTCCTCTCCTTCCGCATCTGCTTCTCTCCGCTCCGGCTTCGCTCAACGCTC 178
|||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 168 TCGAACCCTTTCTTCTCCTTCCGCATCTGCTTCTCTCCGCTCCGGATTTGCTCGACGCTC 227
Query 179 TTCCCTCAGCTCCACTTCTCGCCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTTCC 238
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTCCCTCAGCTCCACTTCTCGTCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTTCC 287
Query 239 ACTGGTTGGAAACAAGGCGCCTGATTTCGAGGCAGAGGCTGTGTTTGATCAGGAGTTCAT 298
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 288 ACTGGTTGGAAACAAGGCGCCTGATTTTGAGGCAGAGGCTGTGTTTGATCAAGAGTTCAT 347
Query 299 CAAGGTTAAGCTCTCTGAGTACATTGGAAAGAAGTATGTGATTCTCTTCTTCTACCCATT 358
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 348 CAAGGTTAAGCTCTCTGATTACATTGGAAAGAAGTATGTGATTCTCTTTTTCTACCCATT 407
Query 359 GGACTTCACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATT 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGACTTTACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATT 467
Query 419 TGAGAAGTTGAACACCGAAATATTAGGTATTTCTGTCGATAGTGTGTTCTCTCACCTTGC 478
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 468 TGAGAAGTTGAACACCGAAGTATTAGGTGTTTCTGTCGATAGTGTGTTCTCTCACCTTGC 527
Query 479 ATGGGTCCAAACAGACAGGAAATCTGGAGGGCTTGGTGATTTGAACTATCCCCTTATTTC 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 528 ATGGGTCCAAACAGACAGGAAATCTGGAGGGCTTGGTGATCTGAACTATCCCCTTATTTC 587
Query 539 AGATGTCACTAAATCAATCTCAAAGTCTTTTGGAGTGCTCATCCATGATCAGGGAATAGC 598
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 588 AGATGTCACTAAATCAATCTCAAAGTCGTTCGGAGTGCTCATCCATGATCAGGGAATAGC 647
Query 599 ACTGAGAGGGCTCTTCATAATTGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAA 658
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACTGAGAGGACTTTTCATAATCGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAA 707
Query 659 TCTTGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TCTTGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACAT 767
Query 719 CCAGGAAAACCCGGATGAGGTCTGCCCAGCGGGATGGAAGCCGGGTGAGAAGTCAATGAA 778
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 768 CCAGGAAAACCCGGATGAAGTCTGCCCAGCAGGATGGAAGCCGGGTGAGAAGTCAATGAA 827
Query 779 ACCTGACCCGAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGAAACTCTACTATGATAG 838
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ACCCGACCCAAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGAAACTCTACTATGATAG 887
Query 839 CAAGAAGGTACAATCTTTGTTATATCTGAGCAGAGttttttttCTTGTACGCTAAAACAA 898
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 888 CAAAAAGGTACAATCTTTGTTATATGTGAGCAGAGTTTTTTTTCTTGTACGCTAAAACAA 947
Query 899 TCCTTTGTTTGATTCTCACTTTGTCCCCAAA-TTATA 934
||||||||||||||||||||||||||||||| |||||
Sbjct 948 TCCTTTGTTTGATTCTCACTTTGTCCCCAAAATTATA 984
> AT5G06290.1 | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin
B | chr5:1919213-1921425 FORWARD LENGTH=1203
Length=1203
Score = 704 bits (381), Expect = 0.0
Identities = 555/640 (87%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 187 GCTCCACTTCTCGCCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTT-CCACTGGTT 245
||||| | || ||||||| ||| || ||||| || ||||| |||||| || ||||||||
Sbjct 355 GCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGCTGATGAT-TTACCACTGGTC 413
Query 246 GGAAACAAGGCGCCTGATTTCGAGGCAGAGGCTGTGTTTGATCAGGAGTTCATCAAGGTT 305
|| || |||||||||||||| || || ||||| || |||||||| |||||||| |||||
Sbjct 414 GGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGATCAAGAGTTCATAAAGGTG 473
Query 306 AAGCTCTCTGAGTACATTGG-AAAGAAGTATGTGATTCTCTTCTTCTACCCATTGGACTT 364
|||||||||||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 474 AAGCTCTCTGAGTACATTGGCAAA-AAGTATGTTATTCTATTCTTCTACCCTTTGGACTT 532
Query 365 CACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATTTGAGAA 424
|||||| |||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct 533 CACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCGTTATGAAGAATTTGAGAA 592
Query 425 GTTGAACACCGAAATATTAGGTATTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGGT 484
| | ||||||||| ||||||| | |||||||| ||||||||||| || ||||| |||||
Sbjct 593 GCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTTCTCGCATCTTGCGTGGGT 652
Query 485 CCAAACAGACAGGAAA-TCTGGAGGGCTTGGTGATTTGAACTATCCCCTTATTTCAGATG 543
||||||||||| |||| || |||||||| |||||| |||| ||||| ||| |||| |||
Sbjct 653 CCAAACAGACA-GAAAGTCGGGAGGGCTCGGTGATCTGAATTATCCTCTTGTTTCGGATA 711
Query 544 TCACTAAATCAATCTCAAAGTCTTTTGGAGTGCTCATCCATGATCAGGGAATAGCACTGA 603
|||||||||| || ||||| || |||||||||||||||| ||||||||| || |||||||
Sbjct 712 TCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCACTGA 771
Query 604 GAGGGCTCTTCATAATTGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCTTG 663
||||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |
Sbjct 772 GAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCTCG 831
Query 664 GTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCAGG 723
||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 832 GTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTATGTTCAAG 891
Query 724 AAAACCCGGATGAGGTCTGCCCAGCGGGATGGAAGCC-GGGTGAGAAGTCAATGAAACCT 782
||||||||||||| || ||||| |||||||||||||| ||| ||||| ||||||||||||
Sbjct 892 AAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGG-GAGAAATCAATGAAACCT 950
Query 783 GACCCGAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGA 822
||||| || ||||||||||| ||||| |||||||| ||||
Sbjct 951 GACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5