BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928879
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11640.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 797 0.0
> AT3G11640.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G52480.1); Has
36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3674499-3675198
FORWARD LENGTH=700
Length=700
Score = 797 bits (431), Expect = 0.0
Identities = 538/588 (91%), Gaps = 13/588 (2%)
Strand=Plus/Plus
Query 24 ATGCATGCCCTCACCAACTCCGGCGCCGTACTTCTCGCCGTGTTACTCTTCTTCCTCCTC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 3 ATGCATGCCCTCACCAACTCCGGCGCCGTACTTCTCGCCGTGTTACTCTTCTTTCTGCTC 62
Query 84 GTTCTCCTCGCCGAGCTCTCTTACATCTTTTGTCGCCGCACCGGATCTTTACCGTCTCCG 143
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 ATCCTTTTCGCCGAGCTCTCTTACATCTTTTGTTGCCGCACCGGATCTTTACCGTCTCCG 122
Query 144 GCAAGTAAAGAGGTTATTTTCCAATTCTTGATGTGTTGCAAGAAGAA-C-C-ACCACTCT 200
||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 123 GCAAGTAAAGAGGTTCTTTTCCAATTCTTGATGTGTTGCAAGAAGAATCACCACCACTCT 182
Query 201 CGTATTGAGCCAAGTACCGGAATTGTTTCTGTACAGATGGAGGAGGATGTTGTTGCTGCG 260
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTATTGAGCCATGCACCGGTATTGTTTCTGTACAGATGGAGGAGGATGTTGTTGCTGCG 242
Query 261 GTGGCGCCGGAGGAAGATTT-GTTTGCGGTGGACAAGTGGCGAGTGTCGAGGCTTCTCTT 319
| || ||| ||||| || || | |||| |||||||||||| |||||||||||||||||
Sbjct 243 GCGGTGCCTGAGGAGGAATTCGCG-GCGGCGGACAAGTGGCGGGTGTCGAGGCTTCTCTT 301
Query 320 CACAATCGAGGAAGAGGATTTGGAACTGGAAGATGAAGATGATGATGTGGTCTCTGCGAA 379
|||||| || |||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 302 CACAATTGAAGAAGAGGATTTGGAACTGGAAGATGATGATGATGATGTGATCTCTGCGGA 361
Query 380 GG-AGGATAATGACGGCGAACTCCGAGTTGACATTCCGGTGGAATATTCCGGCGATCCAA 438
|| || |||||| | |||| ||| |||||| ||||||||||| ||||||||||||||||
Sbjct 362 GGTAG-ATAATGGCTTCGAAGTCCAAGTTGATATTCCGGTGGAGTATTCCGGCGATCCAA 420
Query 439 CTCCGTTCTTGACGCCATGCGACTCACCTCCTTACTTCACTCCTTCGCCATCTCCTGGTC 498
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 421 CTCCGTTCTTGACGCCGTGCAACTCACCTCCTTACTTTACTCCTTCGCCATCTCCTGGTC 480
Query 499 GGGATATGGATGACGTCATTGATGTTTATGAAGTCAGCAGCAGAAACAGAAACTGTTGTT 558
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 481 GGGATATGGATGACGTCATTGATGTATATGAAGTCAGCAGCAGAAAC------TGTTGTT 534
Query 559 TCAATTTCCAAGGCTCTCAGATGTGTTAACATTTTTTGCTTAATTCCA 606
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 TCAATTTCCAAGGCTCTCAGATGTGTTAACATTTTTTGCATAATTCCA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5