BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928894 Length=643 Score E Sequences producing significant alignments: (Bits) Value AT3G11770.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 992 0.0 > AT3G11770.1 | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3721324-3722658 REVERSE LENGTH=848 Length=848 Score = 992 bits (537), Expect = 0.0 Identities = 606/640 (95%), Gaps = 1/640 (0%) Strand=Plus/Plus Query 5 AGTGATATCAGACCAC-ATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 63 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 AGTGATTTCAGACCACAATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 122 Query 64 CTTGGATCCAGACCAAAGCCATTGATGTTGGATCAACAACCGATATCTCTCCTTACCTTT 123 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 123 CTTGGGTCCAGACCAAAGCCATTGATGTTGAATCAACAACCGATATCTCTCCTTACCTTT 182 Query 124 CCAAGATCCTAGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTCGATGTGTACT 183 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 183 CCAAGATCCTTGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTTGATGTGTATT 242 Query 184 GGGATGTTGAATCTGTTAACACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 243 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 243 GGGATGTCAAATCAGTTAGCACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 302 Query 244 CGAAAAACTTCTGTCTCTTCCTCCGCCTCCCTAACCCGTTCAATGATAATCTCAAGGATC 303 | |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 303 CTAAAAACTTCTGTCTCTTCCTCCGCCTGCCGAACCCGTTCTGTGATAATCTCAAGGATC 362 Query 304 TTTACCGCTTCTTTGCTTCAAAATTTGTCACATTTGTCGGTGTCCAGATCCAAGAAGACC 363 |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 363 TTTATCGCTTCTTTGCTTCCAAATTTGTCACATTTGTCGGTGTCCAGATTCAAGAAGACC 422 Query 364 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCTTTGGAGATTGGGAAAT 423 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 423 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCGTTGGAGATTGGGAAAC 482 Query 424 TAGCTGCGGTTGCCCGAGGAACTCCAATTGTTGAATTCCTTGGAACCAGAGAATTAGCTC 483 |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 483 TAGCTGCGAAAGCCCGAGGTACTCCAATTGTTGAGTTCCTTGGAACCAGAGAATTAGCTC 542 Query 484 ACAAGATTCTTTGGTATGACATGAGTCGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 543 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 543 ACAAGATTCTTTGGTATGACATGAGTAGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 602 Query 544 CAAGCTCTAATGATCGTCTTGAAGCTGCAGCCATCGAAGGTTGGCTTATTTTCAATGTCT 603 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 603 CCAGCTCTAATGATCGTCTTGAAGCTGCTGCCATTGAAGGTTGGCTTATTTTCAATGTCT 662 Query 604 ACGATCAATTGCAGCAGTGACTTCTCGAGGCAATGTCCTT 643 |||||||||||||||||||| || ||| |||||||| ||| Sbjct 663 ACGATCAATTGCAGCAGTGATTTTTCGTGGCAATGTTCTT 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31044702846 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5