BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928894
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11770.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 992 0.0
> AT3G11770.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:3721324-3722658 REVERSE
LENGTH=848
Length=848
Score = 992 bits (537), Expect = 0.0
Identities = 606/640 (95%), Gaps = 1/640 (0%)
Strand=Plus/Plus
Query 5 AGTGATATCAGACCAC-ATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 63
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AGTGATTTCAGACCACAATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 122
Query 64 CTTGGATCCAGACCAAAGCCATTGATGTTGGATCAACAACCGATATCTCTCCTTACCTTT 123
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 CTTGGGTCCAGACCAAAGCCATTGATGTTGAATCAACAACCGATATCTCTCCTTACCTTT 182
Query 124 CCAAGATCCTAGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTCGATGTGTACT 183
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 183 CCAAGATCCTTGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTTGATGTGTATT 242
Query 184 GGGATGTTGAATCTGTTAACACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 243
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGGATGTCAAATCAGTTAGCACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 302
Query 244 CGAAAAACTTCTGTCTCTTCCTCCGCCTCCCTAACCCGTTCAATGATAATCTCAAGGATC 303
| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 303 CTAAAAACTTCTGTCTCTTCCTCCGCCTGCCGAACCCGTTCTGTGATAATCTCAAGGATC 362
Query 304 TTTACCGCTTCTTTGCTTCAAAATTTGTCACATTTGTCGGTGTCCAGATCCAAGAAGACC 363
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 363 TTTATCGCTTCTTTGCTTCCAAATTTGTCACATTTGTCGGTGTCCAGATTCAAGAAGACC 422
Query 364 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCTTTGGAGATTGGGAAAT 423
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCGTTGGAGATTGGGAAAC 482
Query 424 TAGCTGCGGTTGCCCGAGGAACTCCAATTGTTGAATTCCTTGGAACCAGAGAATTAGCTC 483
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 483 TAGCTGCGAAAGCCCGAGGTACTCCAATTGTTGAGTTCCTTGGAACCAGAGAATTAGCTC 542
Query 484 ACAAGATTCTTTGGTATGACATGAGTCGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 543
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 543 ACAAGATTCTTTGGTATGACATGAGTAGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 602
Query 544 CAAGCTCTAATGATCGTCTTGAAGCTGCAGCCATCGAAGGTTGGCTTATTTTCAATGTCT 603
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 603 CCAGCTCTAATGATCGTCTTGAAGCTGCTGCCATTGAAGGTTGGCTTATTTTCAATGTCT 662
Query 604 ACGATCAATTGCAGCAGTGACTTCTCGAGGCAATGTCCTT 643
|||||||||||||||||||| || ||| |||||||| |||
Sbjct 663 ACGATCAATTGCAGCAGTGATTTTTCGTGGCAATGTTCTT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31044702846
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5