BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928898
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11820.1 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1,... 1676 0.0
> AT3G11820.1 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1,
PEN1 | syntaxin of plants 121 | chr3:3729305-3731116 REVERSE
LENGTH=1524
Length=1524
Score = 1676 bits (907), Expect = 0.0
Identities = 1016/1066 (95%), Gaps = 18/1066 (2%)
Strand=Plus/Plus
Query 13 TTTC-AATTTTAAATGAACGATTTGTTTTCCAGCTCATTCTCACGCTT-C-C-GCGGAGA 68
|||| ||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 236 TTTCGAATTTTAAATGAACGATTTGTTTTCCAGCTCATTCTCTCGCTTCCGCAGCGGAGA 295
Query 69 ACCATCCCCTCGCCGAGACGCTCCCGGAGGAGGCGACGGAGTTCAGATGGCGAATCCCGC 128
|||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||
Sbjct 296 ACCATCCCCTCGCCGAGACGTTGCCGGCGGTGGCGACGGAGTTCAGATGGCGAATCCCGC 355
Query 129 GGGATCAACCGGTGGTGTGAACCTCGACAAGTTTTTCGAAGATGTTGAATCTGTGAAAGA 188
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GGGATCAACCGGTGGTGTGAACCTCGACAAGTTCTTCGAAGATGTTGAATCTGTGAAAGA 415
Query 189 GGAGTTAAAGGAGCTAGATCGGCTCAACGAAACACTCTCTTCCTGTCACGAGCAGAGCAA 248
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 AGAGCTAAAGGAGCTAGATCGGCTCAACGAAACACTCTCTTCATGTCACGAGCAGAGCAA 475
Query 249 GACGCTTCACAATGCTAAAGCCGTTAAAGATCTCCGGTCTAAAATGGACGGTGACGTTGG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GACGCTTCACAATGCTAAAGCCGTTAAAGATCTCCGGTCTAAAATGGACGGTGACGTTGG 535
Query 309 AGTCGCGTTGAAGAAGGCGAAGATGATTAAGGTTAAACTCGAGGCGCTAGATCGTGCCAA 368
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 536 AGTCGCGTTGAAGAAGGCGAAGATGATTAAAGTTAAACTCGAGGCGCTAGATCGTGCCAA 595
Query 369 TGCTGCTAATCGGAGTCTCCCTGGCTGTGGACCTGGTTCTTCCTCCGATCGAACCAGGAC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGCTGCTAATCGGAGTCTCCCTGGCTGTGGACCTGGTTCTTCCTCCGATCGAACCAGGAC 655
Query 429 CTCTGTCCTCAATGGTCTCAGGAAGAAATTGAAGGACTCTATGGATAGTTTCAATCGTTT 488
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 656 CTCTGTCCTCAATGGTCTCAGGAAGAAATTGATGGACTCTATGGATAGTTTCAACCGATT 715
Query 489 GAGGGAGCTTATCTCGTCCGAGTATAGAGAAACTGTACAGAGGAGGTACTTCACCGTCAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAGGGAGCTTATCTCGTCCGAGTATAGAGAAACTGTACAGAGGAGGTACTTCACCGTCAC 775
Query 549 CGGCGAGAATCCGGACGAAGGAACCCTAGATCGACTTATTTCAACTGGAGAGAGTGAGAG 608
||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 776 CGGCGAGAATCCGGATGAACGAACCCTAGATCGACTGATTTCCACTGGAGAGAGTGAGAG 835
Query 609 ATTCTTGCAGAAAGCAATACAAGAACAAGGAAGAGGAAGGGTGTTAGATACCATTAACGA 668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 ATTCTTGCAGAAAGCAATACAAGAACAAGGAAGAGGAAGGGTGTTAGACACCATTAACGA 895
Query 669 GATCCAAGAAAGGCATGATGCGGTTAAAGACATTGAGAAGAATCTCAGGGAGCTTCACCA 728
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GATTCAAGAAAGGCATGATGCGGTTAAAGACATTGAGAAGAATCTCAGGGAGCTTCACCA 955
Query 729 GGTGTTTCTAGACATGGCGGTGCTGGTAGAGCACCAGGGAGCTCAGCTTGATGACATCGA 788
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGTGTTTCTAGACATGGCCGTGCTGGTAGAGCACCAGGGAGCTCAGCTTGATGACATCGA 1015
Query 789 GAGTCATGTGGGTCGAGCTAGCTCCTTTATCAGAGGCGGAACTGACCAGCTACACACTGC 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1016 GAGTCATGTGGGTCGAGCTAGCTCCTTTATCAGAGGCGGAACTGACCAGCTACAAACCGC 1075
Query 849 TCGGGTTTACCAGAAGAACACGCGAAAATGGACATGT-TACGCCATTATTATTCTCATCA 907
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1076 TCGGGTTTACCAGAAGAACACGCGAAAATGGACATGTATT-GCCATTATTATTCTCATCA 1134
Query 908 TCATCATAATTGTTGTGGTTCTT-CTTGTTTTAAAACCATGGAACAA------TGGAggt 960
||||||||| ||||||||||||| || ||||||||||| |||||||| ||| ||
Sbjct 1135 TCATCATAACTGTTGTGGTTCTTGCT-GTTTTAAAACCGTGGAACAACAGCAGTGGCGGC 1193
Query 961 ggtgg---tggtggtggtggGGGTAACAGTGGAGGAAATCAACCAAATTCAGGGACACCA 1017
|| || ||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1194 GGCGGCGGTGGTGGTGGTGGGGGTACCACTGGAGGAAGTCAACCAAATTCAGGGACACCA 1253
Query 1018 CCAAGTCCTCCTCAGGCAAGGCGTCTATTGCGTTGAAGTTGA-GTT 1062
|||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1254 CCAAATCCTCCTCAGGCAAGGCGTCTATTGCGTTGAAGTTGAAGTT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5