BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928899
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11830.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 2863 0.0
> AT3G11830.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:3732661-3736374 FORWARD LENGTH=1965
Length=1965
Score = 2863 bits (1550), Expect = 0.0
Identities = 1665/1721 (97%), Gaps = 5/1721 (0%)
Strand=Plus/Plus
Query 1 CTCTTCTTTACGCATCTACAATGGGGTCGTCGATGATGCAACCGCAGATCATACTGCTAA 60
|||||| | ||||||||||||| || | ||||||||||||||||||||||||||||| |
Sbjct 54 CTCTTCGTCACGCATCTACAAT--GG-CATCGATGATGCAACCGCAGATCATACTGCTGA 110
Query 61 AGGAAGGGACGGACACATCTCAGGGTAAAGCGCAACTAGTGAGCAACATCAACGCTTGCA 120
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 111 AGGAAGGGACGGACACATCTCAGGGCAAAGCGCAACTAGTAAGCAACATCAACGCTTGCA 170
Query 121 CGGCTGTTGGAGATGTGGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 180
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CTGCTGTTGGAGATGTAGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 230
Query 181 ACGACGATAAAGGATCCGTCACCATTTCCAACGATGGTGCTACCATCATGAAGCTCCTCG 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 231 ACGACGATAAAGGATCCGTCACCATTTCTAACGATGGTGCTACCATCATGAAGCTCCTCG 290
Query 241 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGATTCCGAGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 291 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGACTCCGAGG 350
Query 301 TCGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCTAAGC 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 351 TGGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCGAAGC 410
Query 361 CATTTATTGAGGATGGTGTTCACTCTCAGAATCTTATTAGGAGTTACCGCACTGCAAGCA 420
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 411 CATTTATTGAGGATGGTGTTCACGCTCAGAATCTAATTAGGAGTTACCGCACTGCAAGCA 470
Query 421 CTTTGGCAATTGCGAAGGTTAAAGAACTCGCTGTTAGTATTGAGGGGAAGAGTATAGAGG 480
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 471 CTTTGGCAATTGCCAAGGTTAAAGAACTCGCTGTTAGCATTGAGGGGAAGAGTGTAGAGG 530
Query 481 AAAAGAAAGGTTTGTTGGCTAAATGTGCTGCTACTACTCTTTCATCTAAGCTTATCGGTG 540
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 531 AAAAGAAAGGTTTATTGGCTAAATGTGCTGCTACGACTCTCTCATCTAAGCTTATCGGTG 590
Query 541 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTAATGCTGTGATGGCGATTGGGAATGACG 600
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 591 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTGATGCTGTTATGGCCATTGGGAATGACG 650
Query 601 ACAGGCTAAATCTTATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ACAGGCTAAATCTGATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 710
Query 661 TCGTTGATGGTGTAGCTTTCAAAAAGACATTCTCATATGCAGGTTTTGAGCAACAGCCaa 720
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 711 TCGTTGATGGTGTAGCTTTCAAAAAAACATTCTCGTATGCTGGTTTTGAGCAACAGCCAA 770
Query 721 aaaaaTTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGAAATTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 830
Query 781 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCGCAGTACCAGTCAATAGTTGATGCAG 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 831 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCACAGTACCAGTCAATAGTTGATGCAG 890
Query 841 AATGGAATATCATTTATGACAAGCTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 891 AATGGAATATCATTTATGACAAACTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 950
Query 901 TTTCTAGATTGGCTATCGGAGATCTAGCTACTCAGTATTTTGCGGATCGTGATATTTTCT 960
||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 TTTCTCGATTGGCTATTGGTGATCTAGCTACTCAGTATTTTGCCGATCGTGATATTTTCT 1010
Query 961 GTGCTGGTCGTGTGGCAGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGCGGAACAG 1020
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1011 GTGCTGGTCGTGTTGCTGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGAGGAACAG 1070
Query 1021 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1130
Query 1081 AAAAACAAGTTGGTGGGGAGAGGTTTAATATATTCAGTGGTTGCCCTTCAGGAC-ATACA 1139
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 1131 AAAAACAAGTTGGTGGGGAGAGATTTAATATATTCAGTGGTTGCCCTTCAGGACGA-ACA 1189
Query 1140 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1249
Query 1200 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1309
Query 1260 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1369
Query 1320 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTGGAGGTTATTCCACGACAGTTA 1379
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1370 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTAGAGGTTATTCCACGACAGTTA 1429
Query 1380 TGTGACAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCT 1439
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TGTGATAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCC 1489
Query 1440 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATATCAGAT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1490 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATAGCAGAT 1549
Query 1500 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1609
Query 1560 ACTGAAGCGGCTTGCCTCATTCTTAGTGTGGACGAAACTGTGAAGAACCCTAAATCTGAG 1619
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1610 ACTGAAGCGGCTTGCCTCATTCTTAGTGTCGACGAAACCGTGAAGAACCCTAAATCTGAG 1669
Query 1620 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGGCGCGGTGGAGGCCGAGGCCGT 1679
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1670 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGACGCGGTGGAGGTCGTGGCCGT 1729
Query 1680 GGAATGCGAAGGCGATAGGCTCTGTCTCTTATGCTAAACTT 1720
||||||||||||||||| |||| |||||| |||| ||||||
Sbjct 1730 GGAATGCGAAGGCGATAAGCTCCGTCTCTAATGCCAAACTT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85039723230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5