BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928901
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 372 5e-102
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 296 3e-79
AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 246 3e-64
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 185 8e-46
AT5G38670.1 | Symbols: | Galactose oxidase/kelch repeat superf... 182 1e-44
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 372 bits (201), Expect = 5e-102
Identities = 818/1101 (74%), Gaps = 101/1101 (9%)
Strand=Plus/Plus
Query 186 CGTCACTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGTACCATC 245
|||||||||||||||||||| |||||| |||| |||||||| || ||||||||||| |||
Sbjct 5 CGTCACTTCCCGATGATTTGCTATTGAGCATCTTCGCACGCATCTCAAGATTGTACTATC 64
Query 246 CGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGCTAGCTTCACCGGAGCTTTACA 305
||||||| || || |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 65 CGACTCTCTCTCTTGTCTCCAAGAGCTTCCGATCTCTACTAGCTTCACCGGACCTTTACA 124
Query 306 AGGTCAGGTCTCTCATAGGAAAGACCGAGAGTTGTCTCTATGTGTGC-ATCA-ATTGGTT 363
| | | | || ||| |||| | || |||||||||||||| |||||| ||| ||| ||
Sbjct 125 AAGCCCGATCACTCTTAGGCCACACTGAGAGTTGTCTCTACGTGTGCTTTCATTTTGATT 184
Query 364 -T---CCTGAAGGTTTTCGTTGGTTCACCCTCTGCCGGAAACCTGATC-AAACCCTAACC 418
| ||| || | ||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 185 CTGGCCCT-AA--CACACATTGGTTCACTCTCTGTCGGAAACCTGA-CGGAACCCTAACC 240
Query 419 AATG-----A-TGAGAAGAAGAAATCAAGTGGGTATGTTTTGGCTTCAGTCCCAATGACC 472
|||| | | |||||||||| |||| |||||||||||||||| | || ||||| ||
Sbjct 241 AATGACACCAGTAAGAAGAAGAAGTCAAATGGGTATGTTTTGGCTACTGTGCCAATTCCC 300
Query 473 AATACTCCTCATGCGGA-TTTTGCGAGTGTGGTGGCGCTTGGTTCTGATATCTATAACAT 531
|| |||||| ||| | |||| | ||| | |||||| |||||||||||||||| |||||
Sbjct 301 CATTCTCCTCCTGCAAACTTTT-CAAGTCTCGTGGCGGTTGGTTCTGATATCTACAACAT 359
Query 532 TGGCGTA-CCACAATCCTCTAGGGAAGCCTCCTCCTCTAGCGTCTTTATTCTGGATTGCC 590
||| | | ||| | | ||| || | ||||||| ||||| |||| |||||||||| ||
Sbjct 360 TGGTGGATCCA-TTTAC-CTA-GG-ACCCTCCTCGTCTAGTGTCTCGATTCTGGATTCCC 415
Query 591 GGTCTCACACT-TGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCT-AT-TTACTGTCTCTG 647
|||||||| | |||||| ||||||||||||||| ||||||||| || | || | ||||
Sbjct 416 AGTCTCACA-TGTGGCGCGAGGCTCCAAGCTTGCGGGTGGAGCTGATGTCAC-AT-TCTG 472
Query 648 TTGGCCTCATTGATGGAAAGAAGATTTATGCT-GCAGGATTTTTC---GAT-GC-----C 697
| || || |||| | | ||||| |||| | |||||| | | ||| || |
Sbjct 473 CTAGCGTCCTTGA--CAGA-AAGATATATG-TAGCAGGAAGCTACAAAGATGGCAATGGC 528
Query 698 AATTCCGAGGAC---AAGAACTCACTCTCGGTGTTCGACCCCAAAACACAAGCT-TGGGA 753
||||| | | ||||||| || |||||||||| | |||||||||| | ||| |
Sbjct 529 GATTCCAACTCCTGTAAGAACTTGTTCGAGGTGTTCGACACAAAAACACAAG-TGTGGCA 587
Query 754 TCCTGTGCCCATCCCTTGCAGTGAGCCACTCGGCGTGTTTTACCGT-C-ACAGCGCATGT 811
||||| ||||||||| ||||| || || ||| | ||||| | | | | |||||||||
Sbjct 588 TCCTGAGCCCATCCCATGCAGCAAGACAAAAGGCATTTTTTA-C-TCCAAAAGCGCATGT 645
Query 812 ATTGACGGGAAGTTACATGT-G-G-CGGCTCAAAATATGAATGTTGCTTACAACTT-CAA 867
||||| || ||||| || || | | || ||| | || || || || ||| |||
Sbjct 646 ATTGATGGAAAGTTTCACGTGGAGACGACTC---A-CGGAGTGGTG--TA-TGCTTACAA 698
Query 868 GGAAGCTAGATGGGAC-A-GCTCT-CC-ACGAGTAATATATTATCACATGATTTCTA-AT 922
||||| |||||||||| | ||| | || |||| | | | ||| | | ||| | ||
Sbjct 699 GGAAGGTAGATGGGACAAGGCTATACCAACGA-T-GTTTGGTAT--GAGGGCTTC-ATAT 753
Query 923 TCTTTTTGCGTGGTTGAGAATGTTCTCTACTCGGCTTC-TCATGGAGCATTCAAATGGTT 981
|||||||||| | | | |||||| | | || ||| || |||| |||| |||||
Sbjct 754 TCTTTTTGCGAGATAAATAATGTTTTGTTCT-ATATTCATCGCGGAGTGTTCAGATGGTA 812
Query 982 TGACAC--CG--AGGCAGGCTGGAGAGTTTTGCAGGGTTTGGTAGGACTACCCAAGTTT- 1036
||| || | | | | | |||||| | ||| | |||||| |||||||| || |||||
Sbjct 813 TGATACTAAGTTAAGAATG-TGGAGAATATTGAAAGGTTTGTTAGGACTA-CCTAGTTTA 870
Query 1037 CCTCATG-AT-TCTTGTGTTAGGTTGGGTAATTTTGGTGGAAAGCTAGCTGTTTTGTGGG 1094
||| | | || | || |||||| |||| | ||| |||||||||| | || ||||| ||||
Sbjct 871 CCTGA-GAATATGTT-TGTTAGATTGGCTGATTATGGTGGAAAGATGGCGGTTTTATGGG 928
Query 1095 -AGACGAT--CCCTTATGGTAATGTGTATTGTAGCCTTATA-AAGAAGATGATTTGGTGT 1150
||| ||| ||||| | | || | | || | | | | ||| |||||||||||||
Sbjct 929 AAGAGGATCGCCCTTCT--T-GTGGGGCTGGT-GGCAGAGATGAGATGATGATTTGGTGT 984
Query 1151 GCGGTGATTGAGCTTGAAAGACGC-CCT-AATTGTGAAATTTGGGGGAAA-GTTGAGTGG 1207
|| ||||||| |||| ||| | || ||| |||| | | ||| ||||||| |||||||||
Sbjct 985 GCCGTGATTGCGCTT-AAA-AGGCACCTAAATT-TTAGTTTTTGGGGAAAGGTTGAGTGG 1041
Query 1208 TTTGATCATGTGCTTACAGTC 1228
|||||||||||||||||||||
Sbjct 1042 TTTGATCATGTGCTTACAGTC 1062
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 296 bits (160), Expect = 3e-79
Identities = 401/512 (78%), Gaps = 37/512 (7%)
Strand=Plus/Plus
Query 180 CAATTCCGTCACTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGT 239
||| |||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| |
Sbjct 77 CAAATCCGTCACTTCCCGATGATTTGGTATTGGTCATCATCGCACGCGTCTCAATATTAT 136
Query 240 ACCATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGCTAGCTTCACCGGAGC 299
|| |||| | ||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 137 ACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGC 196
Query 300 TTTACAAGGTCAGGTCTCTCATAGGAAAG-ACCGAGAGTTGTCTCTATGTGTGCATCAAT 358
|||||||||||||||| ||| | || | | |||||| |||||||||||||||| |||
Sbjct 197 TTTACAAGGTCAGGTCACTCTTGGGCC-GCAGGGAGAGTCGTCTCTATGTGTGCATAAAT 255
Query 359 -TGGT-TTCCTG-AA----GGTTTTCGTTGGTTCACCCTCTGCCGGAAACCTGATCAAAC 411
|| | ||| | || || | | ||||||||||||||||||||||| |||| |||
Sbjct 256 ATG-TATTCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCGAAC 314
Query 412 C-CTAACCAAT-G-A-TGAGAAGAAGAA-A--TCAAGTGGGTATGTTTTGGCTTCAGTCC 464
| ||||| | | | | || || || | | |||||||| ||||| ||||| | |||
Sbjct 315 AAC-AACCAGTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCTTGGCAAGAATCC 373
Query 465 CAATGACCAATACTCCTCATG-C---G-GATTTTGCGAGTGTGGTGGCGCTTGGTTCTGA 519
|||| || || ||||| || | | ||| | || | | |||| |||||||| |
Sbjct 374 CAATTCCCCATTCTCCTT-TGACTCAGAGATATAGCC--TC-GC-GGCGGTTGGTTCTAA 428
Query 520 TATCTATAACATTGGCGTA-CCACA-ATCCTCTAGG-GAAGCCTCCTCCTCTAGCGTCTT 576
||||||||||||||||||| ||| | | || | | || ||||||| | || ||||
Sbjct 429 TATCTATAACATTGGCGTAACCAGATA-CCACCATTTGA--CCTCCTC-T--AGTGTCTG 482
Query 577 TATTCTGGATTGCCGGTCTCACACTTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATT 636
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 483 GGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATT 542
Query 637 TACTGTCTCTGTTGGCCTCATTGATGGAAAGA 668
|| || |||||| || || ||||| |||||
Sbjct 543 TAGAGTTTCTGTTAGCGTCCTTGATCAAAAGA 574
> AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2047305-2048553 REVERSE LENGTH=1249
Length=1249
Score = 246 bits (133), Expect = 3e-64
Identities = 391/507 (77%), Gaps = 51/507 (10%)
Strand=Plus/Plus
Query 183 TTCCGTCACTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGTACC 242
||| ||| ||||||||||||||| |||||| ||||||||| |||||||| ||||||||||
Sbjct 89 TTCAGTCGCTTCCCGATGATTTGATATTGAGCATCGTCGCTCGCGTCCCGAGATTGTACC 148
Query 243 ATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGCTAGCTTCACCGGAGCTTT 302
||| ||| | || ||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 149 ATCGGACAGTCTCGCTCGTCTGCAAGAGCTTTCGATCTCTTCTAGTTTCACCGGAGCTTT 208
Query 303 ACAAGGTCAGGTC--TCTCATAGGAAAGACCGAGAGTTGTCTCTATGTGTGCATCAATTG 360
|||||| | | || |||| ||| | |||||||| ||||||||| ||| ||| | |
Sbjct 209 ACAAGGCCCGATCAGTCTC--AGGCCACACCGAGAGCTGTCTCTATCTGTCCAT--AGCG 264
Query 361 -GTT-TCCTGAAGGTTTTCG-TTGGTTCACCCTCTGCCGGAAACCTGATCAAACCCTAAC 417
||| ||||| | || ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 265 TGTTATCCTG-A--TTATCGCAT-GTTCACCCTCTGCCGGAAACCTGATCAAACCCTAAC 320
Query 418 CA--A-TGATGAG-A--AGAAGAA-A--TCAAGTGGGTATGT-TTTGGCTTCAGTCCCA- 466
|| | ||| ||| | ||||||| | |||| ||| ||| | ||||||| ||||||||
Sbjct 321 CACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT-TATTTGGCTCCAGTCCCAG 379
Query 467 ATGACCA-ATACTCCTCATG-CGGATTT-TGCGAGTGTGGTGGCGCTTGGTTCTGATATC 523
|| ||| || ||| || || | | || | ||||| | || || ||||||||||||||
Sbjct 380 AT--CCAGATTCTCATCCTGTCT-ACTTCT-CGAGTCTCGTCACGGTTGGTTCTGATATC 435
Query 524 TATAACATTGGCGTACCACAATCCTCTAGGGAAGCCTCCTCCTCTAGCGTCTTTATTCTG 583
|| ||||||| || | || | | |||||||| | | ||||| ||||||
Sbjct 436 TACAACATTGCCGG-------T--TC--GC-ACGCCTCCTC-TA-A-CGTCTCGATTCTG 480
Query 584 GATTGCCGGTCTCACACTTGGCGCCAGGCTCCAAGCTTGC-CGGTGGAGCTATT-TACTG 641
||||||||||| |||| |||||| ||||||| || ||| || |||||||| | | |
Sbjct 481 GATTGCCGGTCAAACACGTGGCGCGAGGCTCCGAGATTGGGCG-TGGAGCTAACCT-CAG 538
Query 642 TCTCTGTTGGCCTCATTGATGGAAAGA 668
| |||| | || || ||||| ||||||
Sbjct 539 TTTCTGCTAGCGTCCTTGATCGAAAGA 565
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 185 bits (100), Expect = 8e-46
Identities = 198/243 (81%), Gaps = 16/243 (7%)
Strand=Plus/Plus
Query 191 CTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGTACCATCCGACT 250
|||||||||||| || || ||| |||| | ||||||||| ||||||||||| ||||||||
Sbjct 164 CTTCCCGATGATGTGCTAGTGAGCATCTTTGCACGCGTCTCAAGATTGTACTATCCGACT 223
Query 251 CTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGC-TAGCTTCACCGGAGCTTTACAAGGT 309
||| |||||||||||||||||| ||| ||| | |||||||||| ||||| ||||||||
Sbjct 224 CTAAATCTCGTCTCCAAGAGCTTTAGATGTCT-CTTAGCTTCACCAGAGCTATACAAGGT 282
Query 310 CAGGTCTCTCATAGGAAAGACCGAGAGTTGTCTCTATGTGTGCATCAATTGGTTTCC-TG 368
| |||| ||| |||| || |||||||||||||| |||||||| || | || |||| |
Sbjct 283 CCGGTCACTCTTAGGCAACACCGAGAGTTGTCTTTATGTGTG-TTC-A-CGG-TTCCAAG 338
Query 369 AAGGT-TTTCG-----T---TGGTTCACCCTCTGCCGGAAACCTGATCAAACCCTAACCA 419
| || | || | |||||||||||||| |||||||||||||||||||||||||
Sbjct 339 ATCGTCATACGAACACTACCTGGTTCACCCTCTGTCGGAAACCTGATCAAACCCTAACCA 398
Query 420 ATG 422
|||
Sbjct 399 ATG 401
> AT5G38670.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15475786-15476871 FORWARD LENGTH=876
Length=876
Score = 182 bits (98), Expect = 1e-44
Identities = 156/183 (85%), Gaps = 8/183 (4%)
Strand=Plus/Plus
Query 168 CGCAATCGAGCCC-AATTCCGTCACTTCCCGATGATTTGGTATTGAACAT-CGTCGCACG 225
||||| ||| ||| || |||||||||||||||||||||| |||||| | | |||||||||
Sbjct 8 CGCAAACGAACCCTAA-TCCGTCACTTCCCGATGATTTGATATTGAGC-TGCGTCGCACG 65
Query 226 CGTCCCAAGATTGTACCATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGC- 284
||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 66 GGTCTCAAGATTGTATTATCCGGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCT-CA 124
Query 285 TAGCTTCACCGGAGCTTTACAAGGTCAGGTCTCTCATAGGAAAG-ACCGAGAGTTGTCTC 343
||||||||||||||||||||||| | | || ||| | ||| | || ||||||||||||
Sbjct 125 TAGCTTCACCGGAGCTTTACAAGACCCGATCACTCTT-GGACCGCACGGAGAGTTGTCTC 183
Query 344 TAT 346
|||
Sbjct 184 TAT 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5