BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928904

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11880.1 | Symbols:  | Protein of unknown function DUF2359, ...   178    4e-44


> AT3G11880.1 | Symbols:  | Protein of unknown function DUF2359, 
transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707
Length=1707

 Score =  178 bits (96),  Expect = 4e-44
 Identities = 118/129 (91%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  240   GAAGCTGACAAGTCCTGCAAAGTGATCTTGGGTAGACTCTTCCGTGAAAGTGGCTGCGTC  299
             |||||||||||||||||||||||||| | ||||||| |||||| ||||| || |||| ||
Sbjct  1244  GAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTCTTCCCTGAAAATGCCTGCCTC  1303

Query  300   AAAGGTACAGCCATTATTACTGCTGTGGTTCTAGCTGCTGCAGTTATACTATCTTCCAAC  359
             |||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||
Sbjct  1304  AAAGGTACAGCCATTATTACTGCTGTGGTTCTAGCTGCTGTAGCTGTACTAGCTTCCAAC  1363

Query  360   CTGTAGGCT  368
             |||||||||
Sbjct  1364  CTGTAGGCT  1372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5