BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928910
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11900.1 | Symbols: ANT1 | aromatic and neutral transporter ... 2145 0.0
> AT3G11900.1 | Symbols: ANT1 | aromatic and neutral transporter
1 | chr3:3758452-3760378 FORWARD LENGTH=1645
Length=1645
Score = 2145 bits (1161), Expect = 0.0
Identities = 1269/1323 (96%), Gaps = 0/1323 (0%)
Strand=Plus/Plus
Query 18 GGCGATGGCAATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTGATAAA 77
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 68 GGCGATGGCGATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTAATAAA 127
Query 78 ACCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAGACGCTTGGTAA 137
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 128 ATCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAAACGCTCGGTAA 187
Query 138 CATTATCGTCTCAATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCGTCGC 197
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 CATTATCGTCTCCATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCATCGC 247
Query 198 CGGTTGGTTCGCCGGATCTCTCGGCGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 257
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 CGGTTGGTTAGCCGGATCTCTCGGTGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 307
Query 258 GCTCCTCCTCATTCAATGTAGAGATAAGCTAGAATCGGAACAAGGAGAAGAAGAATCGAA 317
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 308 GCTCCTCCTCATTCAGTGCAGAGATAAGCTAGAATCGGAAGAAGGAGAAGAAGAATCGAA 367
Query 318 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 427
Query 378 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCTTATCTAGTGTTCATAGGACGAAA 437
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 428 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCGTATTTAGTGTTCATAGGTCGAAA 487
Query 438 CTTGTCATCCATATTTAGTTCATATGGGTTAAGTATGGTGTCTTTCATCTTGATTCTGGT 497
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 488 CTTGTCATCCATATTTAGTTCGTATGGGTTAAGTATGGTTTCTTTCATATTGATTCTGGT 547
Query 498 TCCAATCGAAGTTGGATTGTCTTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 557
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCCAATCGAAGTTGGATTGTCGTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 607
Query 558 CTTTGCTGATATATGCAACATTATAGCAATGTGTTTCGTTGTCAAAGAAAATGTGGAAAT 617
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 608 CTTTGCTGATATATGCAACATCATAGCAATGTGTTTTGTTGTCAAAGAAAATGTGGAAAT 667
Query 618 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACCGCTATTTCGTCTACCATTGGTGG 677
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACTGCTATTTCGTCTACCATTGGTGG 727
Query 678 TTTACCTTTTGCTGGAGGAGTTGCGGTCTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 737
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 728 TTTACCTTTTGCTGGAGGAGTTGCGGTGTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 787
Query 738 TTTAGAAAATTCAATGAGGGAGAGAGAAGCTTTCCCTAAGTTGTTAGCTAAAGTGCTTGC 797
||| || | ||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 788 TTTGGAGAGTTCTATGAGGGAAAGAGAAGCTTTCCCTAAATTGTTAGCTAAAGTGCTTGC 847
Query 798 GGGGATTACGTTTGTCTATGTGTTGTTTGGGTTTTGTGGTTATATGGCTTATGGCGATCA 857
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 848 CGGGATTACGTTTGTCTATGTGTTGTTCGGGTTTTGTGGTTATATGGCTTATGGTGATCA 907
Query 858 AACAAAGGATATCATCACACTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTGCAGAT 917
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 908 AACAAAGGATATCATCACTCTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTTCAGAT 967
Query 918 TGGGTTATGTGTGGGATTGACGTTTACATTCCCGATTATGGTACATCCGCTTAATGAGAT 977
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 968 TGGGTTATGTGTGGGATTGACGTTTACATTTCCGATCATGGTACATCCGCTTAACGAGAT 1027
Query 978 CATAGAGCAGAAACTGAAGAAGATAGATTGGCTTCAAAAGCATCATCATGGGTACAGCAA 1037
|||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1028 CATAGAGCAGAAACTGAAGAGGATAGACTGGCTTCAAAAGCATCATAATGGGTACAGCAA 1087
Query 1038 CGAAACAGGTTCAGTCTCAAAATGTGCAATCTTTATAACGAGGACGCTTTTGGTGGTAGG 1097
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1088 CGAAACAGGTTCAGTCTCAAAATTTGCAATCTTTACAACGAGGACACTTTTGGTGGTAGG 1147
Query 1098 ACTTGCAGCAATTGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 ACTTGCAGCAATCGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1207
Query 1158 TACTTTGTGTGCACTCATATCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1217
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TACTTTGTGCGCACTCATCTCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1267
Query 1218 TCCATCACTAAATGTATGGAACAAATCCGTCGATGTATTCATCGTGATTTGCGGGTTGCT 1277
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
Sbjct 1268 TCCATCACTAAATGTATGGAACAAATCCATCGACGTATTCATTGTGATTTGCGGGTTGAT 1327
Query 1278 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAATGGAAACCAAGTGA 1337
|||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct 1328 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAAGGGATAGCATGTGA 1387
Query 1338 TCT 1340
|||
Sbjct 1388 TCT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5