BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928921
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45190.1 | Symbols: DD18 | downregulated in DIF1 18 | chr1:1... 621 2e-177
AT1G47470.1 | Symbols: | Protein of unknown function (DUF784) ... 599 1e-170
AT3G11990.1 | Symbols: | Protein of unknown function (DUF784) ... 597 3e-170
AT2G04031.1 | Symbols: | Protein of unknown function (DUF784) ... 300 1e-80
AT2G04041.1 | Symbols: | Protein of unknown function (DUF784) ... 219 3e-56
> AT1G45190.1 | Symbols: DD18 | downregulated in DIF1 18 | chr1:17104351-17105004
FORWARD LENGTH=654
Length=654
Score = 621 bits (336), Expect = 2e-177
Identities = 485/556 (87%), Gaps = 14/556 (3%)
Strand=Plus/Plus
Query 1 TTCTTACTTCCAAAACCAAAAGCAAATATGGCAAAGTCTGTTTTCATGGTAATGCTCGTG 60
||||||| ||||||| ||||| ||||||||||||| ||| || |||||||||||||||||
Sbjct 29 TTCTTACATCCAAAAACAAAAACAAATATGGCAAAATCTCTTCTCATGGTAATGCTCGTG 88
Query 61 TCCATAGTAATG--GT---T---T-GTCCAATTTTCTCCCAGGAAATTGATCCATATTCA 111
|| ||||||||| | | | ||||||||| |||||| ||||| ||||| |||||
Sbjct 89 TCTATAGTAATGTTTTACATGGCTCGTCCAATTTGCTCCCAAAAAATTAATCCACATTCA 148
Query 112 CAGGAGGTGCCAGAAGATGTGGCCATATCTCCAACTTCAGATTTCGATATTTACGTTGAA 171
|||||| |||||||||||||||||||||||||| |||||||||| | | |||||| |||
Sbjct 149 CAGGAGATGCCAGAAGATGTGGCCATATCTCCATCTTCAGATTTTG--A-TTACGTCGAA 205
Query 172 TCCCCCGATGAAGCTCCATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAG 231
| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 206 GCTCCCGATGAAGCTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAG 265
Query 232 CTTGCTCACCATTACTCGCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCG 291
|||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||||
Sbjct 266 CTTGCTCACCATTACTCGGACAAACAGCTCAAGTTTCTTGAGGCTTGCTCTGAAAAGCCG 325
Query 292 AGCGT-AAAATGCGGAGATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTAC 350
|| | |||||||||| |||||||||||||||||||||| ||||||| | |||||||||
Sbjct 326 AG-TTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAAATGAGACAATGCCAATTAC 384
Query 351 AGATGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAA 410
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 385 GGAGGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGCCATCTAGGATTGGTTAA 444
Query 411 AATCATATTCGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAA 470
| ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| || ||
Sbjct 445 ACTCATATTTGCCACATATGAGTATAAAAATATTGCATCTAAGGGCATTCCAAAGAGCAA 504
Query 471 ACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTT 530
|||| |||||||||| ||| | |||||||| || ||||||||||||||||| || |||||
Sbjct 505 ACAAGCATGGAATGAATGTATTCGTAGAGTAGGTAGCAAGATTGGTGCTCCAGTCTCTTT 564
Query 531 GGAGCAGTAAACTAAT 546
|| || |||||||||
Sbjct 565 TGAACAATAAACTAAT 580
> AT1G47470.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17414611-17415132 REVERSE LENGTH=522
Length=522
Score = 599 bits (324), Expect = 1e-170
Identities = 425/474 (90%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 70 ATGGTTTGTCCAATTTTCTCCCAGGAAATTGATCCATATTCACAGGAGGTGCCAGAAGAT 129
|||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 52 ATGGCTCGTCCAATTTTCTCCCAAGAAATTGATCCATATTCACAGGAGGTGCCAAAAGAT 111
Query 130 GTGGCCATATCTCCAACTTCAGA-TTTCGATATTTACGTTGAATCCCCCGATGAAGCTCC 188
||||||||||||||| ||||| | ||| ||||||||||| ||| | || | |||||||||
Sbjct 112 GTGGCCATATCTCCATCTTCAAAGTTT-GATATTTACGTCGAAGCTCCTGGTGAAGCTCC 170
Query 189 ATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAGCTTGCTCACCATTACTC 248
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 171 ATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTC 230
Query 249 GCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCGAGCGT-AAAATGCGGAG 307
||| ||||||||||||||||| |||||||| |||||||||| ||| | ||||||||||
Sbjct 231 GCATAAACAGCTCGATTTTCTTGAGGCTTGCTCTGAAAAGCCAAGC-TCAAAATGCGGAA 289
Query 308 ATGAGGTTTTCAAGAACATGTTGGATGAGACTA-CGCCAATTACAGATGAATGTTGTCGT 366
|||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 290 ATGAGGTTTTCAAGAACATGTTAGATGAGAC-AGTGCCAATTACAGATGAATGTTGTCGT 348
Query 367 GATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAAAATCATATTCGCCACG 426
|||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||
Sbjct 349 GATATATTGAAGATCGGAAAAGATTGCCATCTCGGATTGGTTAAACTCATATTCGCCACA 408
Query 427 TATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAAACAAACATGGAATGAT 486
||||| ||||| |||| |||||||| || |||||||| || |||||||||||||| ||
Sbjct 409 TATGAGTATAAAAATAAAGCATCTAAAGGCATTCCAAAGAGCAAACAAACATGGAACGAA 468
Query 487 TGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTTGGAGCAGTAA 540
|||||| |||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct 469 TGTGTCTTTAGAGTAGGGAGCAAGATTGGTGCTCCGGTCTCTTTTGAACAGTAA 522
> AT3G11990.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:3817294-3817946 FORWARD LENGTH=653
Length=653
Score = 597 bits (323), Expect = 3e-170
Identities = 481/556 (87%), Gaps = 15/556 (3%)
Strand=Plus/Plus
Query 1 TTCTTACTTCCAAAACCAAAAGCAAATATGGCAAAGTCTGTTTTCATGGTAATGCTCGTG 60
||||||| ||||||| ||||| |||||||||||||||| || |||| ||||||||| ||
Sbjct 29 TTCTTACATCCAAAAACAAAA-AAAATATGGCAAAGTCTCTTCTCATAGTAATGCTCATG 87
Query 61 TCCATAGTAATG--GT---T---T-GTCCAATTTTCTCCCAGGAAATTGATCCATATTCA 111
|| ||||||||| | | | |||||||||||||||| ||||| ||||||||| |
Sbjct 88 TCTATAGTAATGTTTTACATGGCTCGTCCAATTTTCTCCCAAAAAATTAATCCATATTTA 147
Query 112 CAGGAGGTGCCAGAAGATGTGGCCATATCTCCAACTTCAGATTTCGATATTTACGTTGAA 171
||| | ||||| |||||||| ||||||||||| ||||| |||| | | |||||| |||
Sbjct 148 GAGGTGATGCCAAAAGATGTGACCATATCTCCATCTTCAAATTTTG--A-TTACGTCGAA 204
Query 172 TCCCCCGATGAAGCTCCATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAG 231
| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 205 GCTCCCGATGAAGCTCCATTCGAAGAAGCTGATTCACCAGCAATGGAATATGACATGGAG 264
Query 232 CTTGCTCACCATTACTCGCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCG 291
|||||||||||||| ||| ||||||||||| | ||||| |||||||| |||||||||||
Sbjct 265 CTTGCTCACCATTATTCGGACAAACAGCTCAAGTTTCTTGAGGCTTGCTCTGAAAAGCCG 324
Query 292 AGCGT-AAAATGCGGAGATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTAC 350
|| | |||||||||| |||||||||||||||||||||| ||||||| | || ||||||
Sbjct 325 AG-TTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAAATGAGACGATGCTAATTAC 383
Query 351 AGATGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAA 410
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 384 AGAGGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGCCATCTAGGATTGGTTAA 443
Query 411 AATCATATTCGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAA 470
| ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| || ||
Sbjct 444 ACTCATATTTGCCACATATGAGTATAAAAATATTGCATCTAAGGGCATTCCAAAGAGCAA 503
Query 471 ACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTT 530
|||||||||||| || ||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 504 ACAAACATGGAACGAATGTGTCCATAGAGTGGGGAGCAAGATTGGTGCTCCGGTCTCTTT 563
Query 531 GGAGCAGTAAACTAAT 546
|| || | |||||||
Sbjct 564 TGAACAATGAACTAAT 579
> AT2G04031.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620
Score = 300 bits (162), Expect = 1e-80
Identities = 303/368 (82%), Gaps = 21/368 (6%)
Strand=Plus/Plus
Query 185 CTCCATTCGAA-GAAGCTGGTTCACCCGCAATGGAATATGACATGGAGCTTGCTCACCAT 243
||||| | ||| ||| ||| ||||||| ||| |||||||| || |||||||||||||
Sbjct 110 CTCCAGTGGAAGGAA-CTGATTCACCCACAACAGAATATGAGATAGAGCTTGCTCACC-- 166
Query 244 TACTCGCACA-AACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCGAGCGT-AAAAT 301
|| ||| | || | || |||| ||||||| || |||||||||| | ||||
Sbjct 167 -GCT--TACATGA-AGAT-TATATTCT---GGCTTGCCCTAAAAAGCCGAG-TTCCAAAT 217
Query 302 GCGGA-GATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTACAGATGAATGT 360
|| || |||||| ||||||| ||||||||||||| ||| |||||| | ||| ||||||||
Sbjct 218 GC-GATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATGT 276
Query 361 TGTCGTGATATATTGAAGA-TGGGCAAAGATTGTCATCTCGGATTGGTTAAAATCATATT 419
|||| |||||||||||||| | |||||||||||||| || | ||||||||||||||||||
Sbjct 277 TGTCATGATATATTGAAGACT-GGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATT 335
Query 420 CGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAAACAAACATG 479
| ||||| |||| ||||| || ||||||||||||| ||||||||| |||||||| |||||
Sbjct 336 CTCCACGAATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACAGACATG 395
Query 480 GAATGATTGTGTCCGTAGAGTTGGGA-GCAAGATTGGTGCTCCGGTTTCTTTGGAGCAGT 538
|||||||||||||||||||||||||| | | ||||||||||||||| ||||| || | |
Sbjct 396 GAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCTT 454
Query 539 AAACTAAT 546
|||| |||
Sbjct 455 AAACCAAT 462
> AT2G04041.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1308089-1308544 REVERSE LENGTH=456
Length=456
Score = 219 bits (118), Expect = 3e-56
Identities = 226/276 (82%), Gaps = 16/276 (6%)
Strand=Plus/Plus
Query 273 GGCTTGCGCTGAAAAGCCGAGCGT-AAAATGCGGA-GATGAGGTTTTCAAGAACATGTTG 330
||||||| || |||||||||| | ||||| || |||||| ||||||| |||||| ||
Sbjct 189 GGCTTGCCCTAAAAAGCCGAG-TTCCAAATG-TGATGATGAGATTTTCAATAACATGATG 246
Query 331 GATGAGACTACGCCAATTAC-AGATGAATGTTGTCGTGATATATTGAAGA-TGGGCAAAG 388
|||| ||| || ||| | || || |||||||||||||||||||||||||| | || ||||
Sbjct 247 GATGGGACGACACCAGTGACAAG-TGAATGTTGTCGTGATATATTGAAGACT-GGTAAAG 304
Query 389 ATTGTCATCTCGGATTGGTTAAAATCATATTCGCCACGTATGAATATAAGAA-TATTGCA 447
|||||||||| | |||||||||||| ||||| ||||| ||| ||||| || || |||
Sbjct 305 ATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCACGGATGGGTATAA-AAGTAAAGCA 363
Query 448 TCTAAG-GGTATTCCAAATAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGA- 505
|| || | |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 364 TC-CAGAGCAATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGAT 422
Query 506 GCAAGATTGGTGCTCCGGTTTCTTTGGA-GCAGTAA 540
| | ||||||||| ||||| |||| || ||| |||
Sbjct 423 GGA-GATTGGTGCCCCGGTCACTTTTGAAGCA-TAA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5