BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928932
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12100.1 | Symbols: | Cation efflux family protein | chr3:3... 1927 0.0
> AT3G12100.1 | Symbols: | Cation efflux family protein | chr3:3854515-3857319
REVERSE LENGTH=1457
Length=1457
Score = 1927 bits (1043), Expect = 0.0
Identities = 1154/1208 (96%), Gaps = 6/1208 (0%)
Strand=Plus/Plus
Query 18 AAAATGGAGAGATCCATTTCCTTTAATCCTCGATGCGATAACGAGCTCCC-GAATGATCG 76
||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 47 AAAATGGAGAGATCCATTTCCTTTAATCCTCGAGGCGATAACGAGCTCCCTG-ATGATCG 105
Query 77 GAGCAGCGATGTTGGATATGTTGCTAATGATCGGAGGCTTGCTTATTCCCGTTCGTTTCA 136
|||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 106 GAGCAGCGATGTCGGATATGCTGCTAATGATCGGAGGCTTGCTTATTCTCGCTCGTTTCA 165
Query 137 GCAATCTCACGGTCCACGAACGCCGGCGGTCACGGAAGCAGCTAAGCCTTTTCTCGATAG 196
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 166 GCAATCTCACGGTCCACGAACGCCGGCGGTCACGGAAGCGGCTAAGCCTTTTCTCGATAG 225
Query 197 GACGGTCTCGAGCATCGATATGCCGCCGGAGATTTACTCCGTCGACGGGAA-TGATGTGT 255
|||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 226 GACGGTCTCGAGCATCGATATGCCGCCGGATATTTACTCCGTTGA-TGGAAGTGATGTGT 284
Query 256 TTTACGGGGAAGGGAAAGACGTAGAAATAGG-AAAAGTGTCTGTTTTGGATATGGTTTGG 314
||| ||||||||||||||| ||||| || || |||||||||||||||||| |||||||||
Sbjct 285 TTTTCGGGGAAGGGAAAGATGTAGACAT-GGCAAAAGTGTCTGTTTTGGAAATGGTTTGG 343
Query 315 GAGATTTTTGGAGTACTGAGAAGTGGAAATCGGCAGATGAAGAGGTTGTTTCTGCTGATT 374
||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 344 GAGGTTTTTGGAGTAGTGACAAGTGGAAATCGGCAGATGAAGAGACTGTTTCTGCTAATT 403
Query 375 GCGCTTAATGTCTTGTATTCTACAACAGAGCTTTCTATTGGGATCTTCACTGGGCGTGTA 434
||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 404 GCGCTTAATGTGTTGTATTCTACAACAGAGCTCTCTATTGGTATCTTCACTGGTCGTGTA 463
Query 435 GGTTTGGTCTCCGATGCATTCCATTTGACATTTGGTTGTGGGCTCTTGACATTTTCTTTA 494
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 464 GGTTTGGTCTCTGATGCATTCCATTTGACATTTGGTTGTGGTCTCTTGACATTTTCTTTA 523
Query 495 TTTGCAATGGCAACTTCAAGGAAGAAGCCTGATCATGCTTACTCATACGGGTACAAAAGA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TTTGCAATGGCAACTTCAAGGAAGAAGCCTGATCATGCTTACTCATACGGGTACAAAAGA 583
Query 555 CTTGAAGTTTTATCTGCTTTCACTAATGCTCTGTTCCTTATGTTCATGTCATTCTCCTTA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CTTGAAGTTTTATCTGCTTTCACTAATGCTCTGTTCCTTATGTTCATGTCATTCTCCTTA 643
Query 615 GCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCACAAGCATTATTTGATT 674
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 644 GCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCATAAGCATTATTTGATT 703
Query 675 GTATCAGCCGTAACAAATCTACTGGTGAACCTACTAGGTGTTTGGTTCTTCCGGAATTAT 734
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 704 GTATCAGCGGTAACAAATCTGCTGGTGAACCTACTAGGTGTTTGGTTTTTCCGGAATTAT 763
Query 735 GCTCGTGTCAATATTGCCTACAGAAAAGCAGAAGATATGAATTACCACTCTGTTTGCTTG 794
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 764 GCTCGTGTCAATATTGCCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTG 823
Query 795 CACGTCATAGCAGATTCCATCCGCAGTGCAGGTTTGATACTGGCATCTTGGCTCCTCTCT 854
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CACGTCATATCAGATTCCATCCGCAGTGCAGGTTTGATACTGGCATCTTGGCTCCTCTCG 883
Query 855 CTCGGGGTTGAAAATGCAGAAGTCCTATGTTTAGGGTTGGTATCCGTTACCGTGTTTATG 914
|||||||||||||||||||| |||||||||||||| |||||||| || || |||||||||
Sbjct 884 CTCGGGGTTGAAAATGCAGAGGTCCTATGTTTAGGATTGGTATCGGTCACAGTGTTTATG 943
Query 915 CTTGTTATGCCACTCTTCAAAGCCACTGGTGGTGTCTTGCTTCAGATGGCACCCCCAAAC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CTTGTTATGCCACTCTTCAAAGCCACTGGTGGTGTCTTGCTTCAGATGGCACCCCCAAAC 1003
Query 975 ATTCCTTCTTCCGCATTAAGCAAATGCTTGCGACAGATTACTTCTCGAGAAGATGTCATG 1034
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1004 ATTCCTTCTTCTGCTTTAAGCAAATGCTTGCGACAGATTACTTCTCGAGAAGATGTAACG 1063
Query 1035 GAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTGGGCTCACTCAGA 1094
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1064 GAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTTGGCTCACTCAGA 1123
Query 1095 CTCCAGGTGAAGAGCGGAATAGATGAAAGGCCATTACTGCAATATGTATATGATGTATAC 1154
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1124 CTCCAGGTGAAGAGCGGAATAGATGAAAGACCATTACTGCAATATGTATATGATGTATAC 1183
Query 1155 CATGATTTGGGTGTACAAGACTTGACCCTGCAAACTGATTACACTTGAGCTGCATCTGCG 1214
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1184 CATGATTTGGGTGTACAAGACTTGACCCTGCAAACTGATTACACCTAAGCTGCATCTGCC 1243
Query 1215 TCATCTTT 1222
|| |||||
Sbjct 1244 TCTTCTTT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5