BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928939
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR) ... 1543 0.0
AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturon... 337 2e-91
> AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR)
family protein | chr3:3874499-3876237 REVERSE LENGTH=1405
Length=1405
Score = 1543 bits (835), Expect = 0.0
Identities = 960/1021 (94%), Gaps = 6/1021 (1%)
Strand=Plus/Plus
Query 1 AGCATCCACACAAAATCACAATGAAGCTCCTTGTTCatctctctatcttcttatcaatcc 60
|||||||||||| |||||| ||||||||| |||||||||||||||||||||| || ||||
Sbjct 143 AGCATCCACACATAATCACGATGAAGCTCTTTGTTCATCTCTCTATCTTCTTCTCCATCC 202
Query 61 tctttgtctctctcccatcttcttACAGCTGCACCCCTAATGACAAGAATGCCCTCCTTC 120
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 203 TCTTCATCACTCTCCCATCTTCTTACAGCTGCACCGAAAATGACAAGAATGCCCTCCTTC 262
Query 121 AAATCAAGAAATTAC-TGAACAACCCTCCCCTCCTCTCTTCCTGGAACCCCCGAACCGAC 179
||||||||||| || || ||| |||||||| || || |||||||||||||||||||||
Sbjct 263 AAATCAAGAAAGCACTTG-GCAATCCTCCCCTTCTATCCTCCTGGAACCCCCGAACCGAC 321
Query 180 TGTTGTACCGGCTGGACCGGCGTCGAATGCACTAACCGTCGCGTTACAGCTCTCAGCGTT 239
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 322 TGTTGTACCGGCTGGACCGGCGTCGAATGCACTAACCGTCGCGTTACCGGTCTCAGCGTT 381
Query 240 TCCTCCGGCGAAGTCTCCGGCCAGATCCCGTACCAGATCGGCGACCTAC-TTGACCTCCG 298
||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||
Sbjct 382 ACCTCCGGCGAAGTCTCCGGTCAGATCTCGTACCAGATCGGCGACCT-CGTTGACCTCCG 440
Query 299 TACACTCGATTTCAGCTACCTGACCA-ACCTCACAGGAAACATCCCACGCACCATTACCA 357
|||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||
Sbjct 441 TACACTAGATTTCAGCTACCTG-CCACACCTCACCGGAAACATCCCACGCACCATCACCA 499
Query 358 AACTCAAGAACCTCAACACTCTCTTCTTAAAGCACACTAGTCTCTCCGGTCCGATTCCTG 417
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 500 AACTCAAGAACCTCAACACTCTCTACTTGAAGCACACTAGTCTCTCCGGTCCGATTCCTG 559
Query 418 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCCTTTAACCAATTTACCG 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 560 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCTTTTAACCAATTTACCG 619
Query 478 GTCGAATTCCCGGTTCACTGTCTCAGATGCCGAAGCTTGAAGCCATTCAGATCAACGATA 537
||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 620 GTCCAATTCCCGGTTCGCTATCTCAGATGCCGAAGCTTGAAGCCATTCAAATCAACGATA 679
Query 538 ATAAGCTAACCGGCTCTGTACCGAATTCTTTCGGTTCTTTTGTTGGCAACGTCCCTAATC 597
||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 680 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTAATC 739
Query 598 TCTACTTGTCTAACAATAAGCTTTCAGGAAAAATACCGGAATCGTTGTCTAAATACGACT 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 740 TCTACTTGTCTAACAATAAGCTGTCAGGAAAAATACCGGAATCGTTGTCTAAATACGACT 799
Query 658 TCAACGCAGTGGATCTGTCCGGAAATGGTTTCGAAGGAGATGGCTTCATGTTCTTCGGAC 717
|||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 800 TCAACGCAGTGGATTTGTCGGGAAATGGTTTCGAAGGAGATGCCTTTATGTTCTTCGGAC 859
Query 718 GGAACAAAACAACAGTACGAGTGGATCTGTCGAGAAACATGTTTAATTTCGATCTCGTCA 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 860 GGAACAAAACAACAGTACGAGTGGATTTGTCGAGAAACATGTTTAATTTCGATCTCGTCA 919
Query 778 AGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCATAACCATATATACGGGA 837
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 920 AGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCAGAACCATATCTACGGGA 979
Query 838 AGATACCACCAGCGCTGACTAAACTACACCTCAAGCATTTCAACGTGAGCGACAATCATC 897
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 980 AGATACCACCAGCACTGACTAAACTACACCTCGAGCATTTCAACGTGAGCGACAACCATC 1039
Query 898 TCTGTGGAAAAATCCCAAGTGGCGGTCTCCTTCAGACCTTTGAACCATCTGCCTACGCTC 957
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1040 TCTGCGGAAAAATCCCAAGTGGCGGTCTACTTCAGACCTTTGAACCATCTGCCTTCGCTC 1099
Query 958 ACAACATCTGTCTTTGTGGGACTCCCCTTAAGGCTTGTTAAGTTCGTTTTATCTTGGCGG 1017
||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||
Sbjct 1100 ACAACATCTGTCTTTGTGGAACTCCCCTTAAGGCTTGTTAATTTGGTTTAATCTTGGCGG 1159
Query 1018 A 1018
|
Sbjct 1160 A 1160
> AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturonase-inhibitor
protein, blastp match of 53% identity and 7.5e-64
P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor
protein {Citrus sp. cv. Sainumphung} |
chr3:3872314-3873608 REVERSE LENGTH=1295
Length=1295
Score = 337 bits (182), Expect = 2e-91
Identities = 259/296 (88%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 333 GGAAACATCCCACGCACCATTACCAAACTCAAGAACCTCAACACT-CTCTTCT-TAAAGC 390
||||| ||||||| | | || |||| ||||||| |||||| || ||||| | |||| |
Sbjct 410 GGAAATATCCCACCCGCGATCACCATGCTCAAGAGTCTCAAC-CTCCTCTT-TATAAAAC 467
Query 391 ACACTAGTCTCTCCGGTCCGATTCCTGATTACATCAGCGAGCTCAAGAGCCTCACGTTCT 450
|||| | | |||||||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 468 ACACCAATTTCTCCGGTCCGATTCCTGATAACATCAGCGACCTCAAGAACCTCACGTTCT 527
Query 451 TGGACCTTTCCTTTAACCAATTTACCGGTCGAATTCCCGGTTCACTGTCTCAGATGCCGA 510
||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| |
Sbjct 528 TGGACCTTTCCTTTAACCAATTTCCCGGTCCAATTCCCGGTTCGCTATCTCAGATGCCCA 587
Query 511 AGCTTGAAGCCATTCAGATCAACGATAATAAGCTAACCGGCTCTGTACCGAATTCTTTCG 570
|||||||||||||| ||||| |||| |||||||||||||| ||| |||| || |||||||
Sbjct 588 AGCTTGAAGCCATTGAGATCCACGACAATAAGCTAACCGGTTCTATACCAAACTCTTTCG 647
Query 571 GTTCTTTTGTTGGCAACGTCCCT-AATCTCTACTTGTCTAACAATAAGCTTTCAGG 625
||||||||||||||||||||||| || ||| |||||||||||||| |||| |||||
Sbjct 648 GTTCTTTTGTTGGCAACGTCCCTGAA-CTCGACTTGTCTAACAATCAGCTCTCAGG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5