BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928954
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1005 0.0
> AT3G12300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714);
Has 373 Blast hits to 371 proteins in 116 species:
Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants
- 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
| chr3:3921528-3923155 REVERSE LENGTH=895
Length=895
Score = 1005 bits (544), Expect = 0.0
Identities = 590/612 (96%), Gaps = 3/612 (0%)
Strand=Plus/Plus
Query 3 ATT-CGGAGAAGCAGGAAGATGTTCAAGAACACGTTTCAGTCTGGGTTTCTGTCTATTTT 61
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 45 ATTCCGGAGGAGCAGGAAGATGTTCAAGAACACGTTTCAATCTGGGTTTCTGTCTATTTT 104
Query 62 GTACAGTCTAGGAAGCAAGCCTCTGCAGATATGGGATAAAGAAGTTGTGGATGGGCATGT 121
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 105 GTACAGTCTAGGAAGTAAGCCTCTTCAGATATGGGATAAAGAAGTTGTGGATGGACATGT 164
Query 122 GAAGCGTTGCCATGATGATGACATTCAATCCAATGTGCTTGAAGTAGTTGGATCAAACAT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 165 GAAGCGTTGCCATGATGATGACATTCAATCCAATGTGCTTGAAGTAGTTGGATCAAATAT 224
Query 182 CCAGTCTACATATATTACATGTCCTGCTGATCTTTCCGCAACTCTTGGTATCAAACTTCC 241
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 225 TCAGTCTACATACATTACATGTCCTGCTGATCTTTCCGCTACTCTTGGTATCAAACTTCC 284
Query 242 TTTTTTGGTCTTGGTAGTGAAGAATATGAAGAAATATTTCTCATTCGAGATTCAGATTCT 301
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 285 TTTTTTGGTCTTGGTGGTGAAGGATATGAAGAAATATTTCTCATTCGAGATTCAGATTCT 344
Query 302 GGATGACAAGAATGTGCGCCGCCGTTTCCGAGCTTCTAACTTTCAAGCTGTCACTAGAGT 361
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGATGACAAGAATGTTCGCCGGCGTTTCCGAGCTTCTAACTTTCAAGCTGTCACTAGAGT 404
Query 362 AAAGCCATATATTTGCACAATGCCACTGAAGATGGACGAGGGATGGAATCAAATCCAGCT 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AAAGCCGTATATTTGCACAATGCCACTGAAGATGGACGAGGGATGGAATCAAATCCAGCT 464
Query 422 TAACTTAGCTGATCTTACTAGGAGAGCTTATGGGACTAATTATGCTGAGACATTGCGAGT 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TAACTTAGCGGATCTTACTAGGAGAGCTTATGGGACTAATTATGCTGAGACATTGCGAGT 524
Query 482 TCAGATTCATGCTAACTGCCGCGTTAGGCGCATATATTTTGCTGACCGTCTCTACTCAGA 541
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 525 TCAGATTCATGCTAACTGCCGCCTTAGGCGCATATATTTTGCTGATCGTCTCTACTCTGA 584
Query 542 AGAGGAGCTTCCTCCGGAATTCAAGCTGTATCTTCCC-GTGCAGAAAGCATGATAAGTTC 600
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 585 AGAGGAGCTTCCTCCGGAATTCAAGCTGTATCT-CCCAGTGCAGAAAGCATGATAAGTTC 643
Query 601 ATTCCCAATGCT 612
||||| ||||||
Sbjct 644 ATTCCGAATGCT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5