BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928955
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1330 0.0
> AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G06980.4);
Has 102 Blast hits to 102 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:3923735-3925465
FORWARD LENGTH=1218
Length=1218
Score = 1330 bits (720), Expect = 0.0
Identities = 784/816 (96%), Gaps = 0/816 (0%)
Strand=Plus/Plus
Query 50 TGAAGAGCTTGTTGTGCCTAGTTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 109
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 220 TGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 279
Query 110 TATGTGGGGTGGATGGAGCATGAGCTCTCCTGAAGTAGCTGAGAAATGTTTCGATTACGA 169
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 280 TATGTGGGGTGGATGGAGCATGAGCTCCCCTGAAGCAGCTGAGAAATGTTTCGATTACGA 339
Query 170 TGGATTCAATGGAGGAGGAATGATGTATAGTCAGATGGGTATGAGGACAAGTGAAGAAGA 229
||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 340 TGGTTTCAATGGAGAAGGAATGATGTATAGTCAGATGAGTATGAGGACTAGTGAAGAAGA 399
Query 230 AGAAGAGTCTAAGAGATCTAAGGCTTTCTACGGTGCTTCTTCACTTCATGATTTCGAAGG 289
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 400 AGAAGAGTCTAAAAGATCAAAGGCTTTCTATGGTGCTTCTTCACTTCACGATTTCGAAGG 459
Query 290 AATTGAACAGATGGATGATATATTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 349
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 CATCGAACAGATGGATGATATGTTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 519
Query 350 TGGAGATGTTCACCGTGCGTCCAGCAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 409
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 520 TGGAGATGTTCACCGCGCGACCAGTAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 579
Query 410 TGGTGGTAGAGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 469
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 639
Query 470 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAATT 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 640 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACT 699
Query 530 GTCTTCTGAAGAACTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACCGATGA 589
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 GTCTTCTGAAGAATTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACTGATGA 759
Query 590 GACACGCAAATGTTTCCGGGATACCTTTTACCGACTTGCAAGGAGCTCGCAAGATAACTC 649
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 760 GACACGCAAATGTTTCCGGGATACTTTTTACCGACTTGCAAGGAGCTCACAAGATAAATC 819
Query 650 GGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTGTGCAAACGTCTAGATATGATTATGG 709
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 820 TGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTATGCAAACGTCTAGATATGATTATGG 879
Query 710 TGATGGAAACAGGTTGAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 769
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TGATGGAAACAGGTTTAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 939
Query 770 AGCCGTCGCAAACCTCACATTTAACAAAATGGAATCCAACATAAGCAATTTTCCGCTGTC 829
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 940 AGCTGTCGCAAACCTCACATTCAACAAAATGGAATCCAACATAAGCAATTTTCCTCTGTC 999
Query 830 GGAGAGAGTACAGTAGCTGCCACTGATCAAGATCAA 865
||| ||||||||||||||||| ||||||||||||||
Sbjct 1000 GGAAAGAGTACAGTAGCTGCCGCTGATCAAGATCAA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5