BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928959
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12350.1 | Symbols: | F-box family protein | chr3:3931564-3... 1982 0.0
> AT3G12350.1 | Symbols: | F-box family protein | chr3:3931564-3933356
FORWARD LENGTH=1583
Length=1583
Score = 1982 bits (1073), Expect = 0.0
Identities = 1221/1294 (94%), Gaps = 3/1294 (0%)
Strand=Plus/Plus
Query 1 AGAAATTTCGTCTGAGAAAA-ATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAA 59
|||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 42 AGAAGTTTCATCTGAGAAAAGATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAG 101
Query 60 GATCTCCAGCTCCGCATCTTGTCATTCCTCTCCCCAGCAGAGATCTCCAGCTTCGCCTGC 119
|||||||||||||| ||||| || ||||| | ||||| |||||||||||||||||||||
Sbjct 102 GATCTCCAGCTCCGAATCTTATCCCTCCTCACACCAGCGGAGATCTCCAGCTTCGCCTGC 161
Query 120 ACATCTAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ACATCGAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 221
Query 180 GATCAGCGATGGGGCAAGAAAACGAAGATCCAGAAATGGGGAAATGGTCAAATCCCTTAT 239
|||||| ||||||| |||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 222 GATCAGAGATGGGGGAAGAAAACTAAGATCCAGAAATGGGCAAACGGTCAAATCCCTTAT 281
Query 240 AGACTCCTTTACAAGACTCTAAAGGGATTGGAAAATCTTATTGGATTCTGGCGTCTCTGC 299
|||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 282 AGACACCTTTACAAGACTCTAAAGGGATTGGAGAATCTAATTGGCTTCTGGCGTCTCTGC 341
Query 300 GGCAGAGCAAATCCCGCAGCTTCATCGCCACCGCTTGtttttttCGATTGGGGGCCTTCT 359
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 342 GGCAGAGCAAATCCCGCCGCTTCATCGCCGCCGCTTGTTTTCTTCGATTGGGGTTCTTCT 401
Query 360 TTTGTATTGGGATCTAGAGTTTTATCTACCGGAGATGAAACTTATCAGGTAAAAAAGACA 419
||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||
Sbjct 402 TTTATATTGGGATCTAGAGTTTTATCCACCGGAGATGATACTTATGAGGTAAAGAAGACA 461
Query 420 CCTTTTCTCTTATTGGGGATTTCGTCGGAGGGACGAACTGAGAATTTCTTGGATCTCGTC 479
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 462 CCTTTTCTCTTAATGGGGATTTCGCCGGAGGGACGATCTGAGAATTTCTTGGATCTCGTC 521
Query 480 GGAGGTTATCTCAGATCTGTGGATGATGATCTGAAAGAATTAGAAGCTTCTGACAATCTC 539
|| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 522 GGTGGTAATCTCAGATCTGTGGATGATGATTTGAAAGAATTAGAAGCTTCTAACAATCTC 581
Query 540 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGT 641
Query 600 TTTATCAACAACAGTCTTAGAGAAGAGCAGAAGAGCTCAGGGGACGAGAGTGATGATTTG 659
|||| |||||||| || ||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 642 TTTACCAACAACAATCGTAGAGAAGACCAGAGGAGCTCAGGGGATGAGAGTGATGATTTG 701
Query 660 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAACTGGCGAATAAGACGAGTCCAGGC 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 702 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAATTGGCGAATAAGACGAGTCCAGGC 761
Query 720 GGTGACaggaggagacagaggaggaaggagaaggagaggCAAGCGTCGAGGACTAAGTGG 779
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGTGACAGGAGGAGACAGAAGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 821
Query 780 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAAACCATTACAA 839
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 822 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAGACCCTTACAA 881
Query 840 GGTTTATGGAAGGGTTTCTGTGAGGGAAGCATGGAGTTATATCTGGTCAAATACGATGAA 899
|| ||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 882 GGCTTATGGAAGGGTTTCTGTGAGGGAAGCATCGAGTTGTATTTGGTCAAATATGATGAA 941
Query 900 GTTGGAGGCATTGTATGCAGAAAAGTAGAGGACTTGTCTCTCTCACGGCACACTCCTCCT 959
|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 942 GTTGGAGGCATTATATGCAGAAAAGTAGAGGACTTGTCCCTCTCACGGTACACTCCTCCT 1001
Query 960 GTGTTCTGGACACCCAAACATGCGTTTATCAGATCTCCCTTTTCAGCTGAAGAAGAGCTG 1019
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1002 GTGTTCTGGACACCCAAACATACGTTCATCAGATCTCCTTTTTCAGCTGAAGAAGAGCTG 1061
Query 1020 CTACTGAATAGTCGAATCCATATTAGCCCTCTCGCCGAAGTTCATGAAAATGTTGTATCT 1079
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1062 CTACTGAATAGTCGAATCCATATTAGCCCTTTCGCTGAAGTTCATGAAAATGTTGTATCT 1121
Query 1080 GGAATGTTGTACATGAAGTCTAGTTACGATCTGGTGTTGCCAGGAGAAGC-GGCCAATGG 1138
||||||||||||||||||||||| | |||||||||||||||||||||| | ||| |||||
Sbjct 1122 GGAATGTTGTACATGAAGTCTAGCTGCGATCTGGTGTTGCCAGGAGAACCTGGC-AATGG 1180
Query 1139 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGAAAATGGGACTTTCGGTTT 1198
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1181 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGACAATGGGACTTTCGGTTT 1240
Query 1199 CGGGTTTCTTCGAGATCAATTTGTCATTGATCTGAAACGTGTTGCCCTGGAAGATGGTTG 1258
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 1241 CGGGTTTCTTCGAGATCAATTTATCATTGATCTGAAACGTGTTGCTCTGGAAGATGGGTG 1300
Query 1259 TCTAGCTGACGAGGTAGAAGCGTCTATGTGATTT 1292
||||||||||||||||||||| | ||||||||||
Sbjct 1301 TCTAGCTGACGAGGTAGAAGCTTGTATGTGATTT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5