BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928961
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12370.1 | Symbols: | Ribosomal protein L10 family protein ... 828 0.0
> AT3G12370.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:3937190-3938094 REVERSE LENGTH=905
Length=905
Score = 828 bits (448), Expect = 0.0
Identities = 519/553 (94%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 2 TTAGCCTCTGTGTAGATCGATGTCTAGCCTCAGAAGAGCTCTGCTCGTCGCAGGGAAGAC 61
||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 97 TTAGCCTCTGTATAGATCGATGGCTAGCCTGAGAAGAGCTCTGCTCGTAGCAGGGAAGAC 156
Query 62 GAAGATCAACCTAGAGAACTGCCATTTCATCACCGGAATCAACTACAACGGTCTCAGCGT 121
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAAGATCAACCTAGAAAACTGCCATTTCATCACCGGAATCAACTACAACGGTCTCAGCGT 216
Query 122 GAAGCAATTACAAGAGCTCCGTGGAATCCTCCGTGAGAACACAAACACGAAGCTCCTCGT 181
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 217 GAAGCAACTACAAGAGCTCCGTGGAATCCTCCGTGAAAACACAAACACGAAGCTCCTCGT 276
Query 182 CGCCAAGAACACTCTGGTGTTCAAAGCCTTAGAAGGAACCAAATGGGAATCTCTGAAGCC 241
||||||||||||| | || | ||||||||| ||||||||||||||||| |||||||||||
Sbjct 277 CGCCAAGAACACTTTAGTCTACAAAGCCTTGGAAGGAACCAAATGGGAGTCTCTGAAGCC 336
Query 242 ATGTATGAAGGGTATGAACGCTTGGCTCTTCGTTCAATCTGAAGATATACCTGCTGCTTT 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 337 ATGTATGAAGGGTATGAACGCTTGGCTATTCGTTCAATCTGAAGATATACCTGCTGCTTT 396
Query 302 GAAGACTTTCATCAGTTTCCAGAAAGAGAAGAAGCTCTACGACAATAATTTAGGCGGTGC 361
|||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 397 GAAGACTTTCATCAATTTTCAGAAAGAGAAGAAGCTCTACGATAACAATTTAGGCGGTGC 456
Query 362 TGTCTTTGAGGAGAAATTGTACGCTCCTCAAGATTACAAGGTTATTGAGACGATGCCATC 421
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 457 TGTTTTTGAGGAGAAATTGTATGCTCCTCAGGATTACAAGGTTATTGAGACGATGCCTTC 516
Query 422 TCGTTCCGATGTTTATGGTATGATGCTTGGTTCTTTGCATTGGCCGGCGTTAGATCTCGT 481
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TCGCGCTGATGTTTATGGTATGATGCTTGGTTCTTTGCATTGGCCGGCGTTAGATCTCGT 576
Query 482 TAATGCGTTGCAGGCACCAACGGCG---TCGGAAAATGAGACTGTTGTTGCATAGAAGGA 538
|||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 577 CAATGCGTTGCAGGCCCCACCGGCGGCGTCGGAAAATGAGACAGTTGTTGCATAGAAGGA 636
Query 539 ATGGA-TTTTCCA 550
| ||| |||||||
Sbjct 637 A-GGAATTTTCCA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26523629616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5