BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928962
Length=2216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12380.2 | Symbols: ARP5 | actin-related protein 5 | chr3:39... 3537 0.0
> AT3G12380.2 | Symbols: ARP5 | actin-related protein 5 | chr3:3938276-3941872
REVERSE LENGTH=2313
Length=2313
Score = 3537 bits (1915), Expect = 0.0
Identities = 2134/2237 (95%), Gaps = 26/2237 (1%)
Strand=Plus/Plus
Query 3 CAGTAAGGAAGAGAAAGCCATGGCGTTCGTTTCGAGGATACGTAGGCAGACTGATTACAA 62
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 70 CAGT-AGGAAGAGAAAGCCATGGCGTTCGTTTCGAGGATACGTAGGCAGAGTGATTACAA 128
Query 63 TACCTATCCATCTTCGATTCCCATTGTTATCGATAATGGCGCTTCCTACTTCCGTATCGG 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TACATATCCATCTTCGATTCCCATTGTTATCGATAATGGCGCTTCCTACTTCCGTATCGG 188
Query 123 GTGGGCAGGAGAAACTGAGCCTCGTGTTGTTTTCCGCAATATCGTGCAAAGACCTCGCCA 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 189 GTGGGCAGGAGAAACTGAGCCTCGTGTTGTTTTCCGCAATATCGTGCAAAGACCACGCCA 248
Query 183 C--A---A-AG---------C---TACAGGTGAAACAGTTACTATTGTTGGCGACCAGGA 224
| | | || | |||||||||||| ||||||||||||||||||| |||
Sbjct 249 CAAAGCTACAGTTCTTCTCTCTAGTACAGGTGAAACTGTTACTATTGTTGGCGACCTGGA 308
Query 225 TCCTGCCATGATGAAGTACTTTGATTGCACTCGCTCTGGACCACGTTCGCCTTTTGACAG 284
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 309 TCCTTCCATGATGAAGTACTTTGATTGCACTCGCTCTGGACCACGTTCCCCTTTTGACAG 368
Query 285 CAATGTGGTTTATCAGTTTGAGATCATGGAATATATTCTTGACTTCGCCTTTGATCGTTT 344
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 369 CAATGTGGTTTATCAGTTTGAGATCATGGAATATATTCTTGACTACGCCTTTGATCGTTT 428
Query 345 GGGTGCTAACGGATCAGGGATTGATCATCCAATCCTAATCACTGAATGTGCATGCAATCC 404
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 429 GGGTGCTAATGGATCAGGGATTGATCATCCAATCCTAATCACTGAATGTGCATGCAACCC 488
Query 405 AGTTCAATCTCGAAGCAAAATGGCAGAACTGCTATTTGAGACTTATGGAGTGCCTGCAGT 464
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AGTTCAATCTCGTAGCAAAATGGCAGAACTGCTATTTGAGACTTATGGAGTGCCTGCAGT 548
Query 465 TGCATTTGGAGTTGATGCTGCTTTCAGCTACAAGTACAATCAACTACATGGAATTTGTAA 524
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 549 TGCATTTGGAGTCGATGCTGCTTTCAGCTACAAATACAATCAACTACATGGAATTTGTAA 608
Query 525 AAAAGATGGAATCGTTCTCTGTCCTGGATTCACTACAACACACGCCATTCCGTTTGTCGA 584
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 609 AAAAGATGGAATTGTTCTCTGTCCTGGATTCACGACAACACACTCCATTCCGTTTGTCGA 668
Query 585 CGGAGAACCTATTTATAAAGGATCCTGCCGAACTAACATTGGTGGATATCATGTCACTGA 644
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 CGGAGAACCTATATATAAAGGATCCAGCCGAACTAACATTGGTGGATATCATGTCACTGA 728
Query 645 TTATTTGAAGCAGCTTCTGTCACTTAAGTACCCTTTTCATTCGTCTAGGTTTACATGGGA 704
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTATTTAAAGCAGCTTCTGTCACTTAAGTACCCTTTTCATTCGTCTAGGTTTACATGGGA 788
Query 705 GAAGGCCGAAGATTTGAAATTGGAACACTGTTATATCGCACCTGACTATGCTTCTGAAAT 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 GAAGGCCGAAGATTTGAAATTGGAACACTGTTATATCGCACCTGACTATGCTTCGGAAAT 848
Query 765 TCGGTTATTCCAGGAAGGAACAAAAGAAGCTGAAGAGAAAACAAGGTATTGGCAGCTTCC 824
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 849 TCGGTTATTCCAGGAAGGAAGAAAAGAAGCTGAAGAGAAAACAAGTTATTGGCAGCTTCC 908
Query 825 ATGGATACCTCCTCCCACGGAAGTTCCCCCATCAGAAGAAGAGATTGCAAGGAAGGCAGC 884
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 ATGGATACCTCCTCCCACCGAAGTTCCTCCATCAGAAGAAGAGATTGCAAGGAAGGCAGC 968
Query 885 TATAAGAGAAAAACAAGGTCAAAGGCTGAGAGAAATGGCTGAAGCAAAGAGATTGTCCAA 944
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 969 TATAAGAGAAAAACAAGGTCAAAGGCTGCGAGAAATGGCTGAAGCAAAGAGAGTGTCCAA 1028
Query 945 GATAAATGAAATGGATAATCAATTGACTAGCTTGCATTTCCTTCTGAAGCAAGTTGACCA 1004
||| ||||| ||||| |||||| ||| |||||||| ||||||| ||||||||||||||||
Sbjct 1029 GATTAATGACATGGAGAATCAACTGATTAGCTTGCGTTTCCTTTTGAAGCAAGTTGACCA 1088
Query 1005 GGTTGAAGAGGATGATATTCCAACCTTTTTGTCAGACACCGGTTACGCGTCCAGGCAAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGTTGAAGAGGATGATATTCCAACCTTTTTGTCAGACACCGGTTACGCGTCCAGGCAAGA 1148
Query 1065 GCTAGAATCTACTATTACGAAAGTGACACAATCGCTTAGAAAAGCAAGGGGCGAGCCGAA 1124
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1149 GCTAGAGTCTACTATTACGAAAGTGACACAGTCGCTTAGAAAAGCAAGGGGTGAGCCGAA 1208
Query 1125 GAATGAACCAGCTGA-TAGTGAAGAGAACACTGATTCTCTTAATAATGAAAAGTATCCTC 1183
||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1209 GAATGAACCAGCTGAGTA-TGAAGAAAACCCTGATTCTCTTAATAATGAAAAGTATCCAC 1267
Query 1184 TTATGAATGTCCCTGATGATATACTTACTCCTGAGCAGCTTAAGGACAAGAGGAGGCAAA 1243
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1268 TTATGAATGTCCCCGATGATATTCTTACTCCTGAGCAGCTTAAGGACAAGAAGAGGCAAA 1327
Query 1244 TGTTTCTTAAAACAACAGCAGAGGGTCGGCTACGAGCTAGACAAAAGCGTAATGAGGAGG 1303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1328 TGTTTCTTAAAACAACAGCAGAGGGCCGGCTACGAGCTAGACAAAAGCGTAATGAGGAGG 1387
Query 1304 AACTCGAAAAAGAGAAAAGAAATCAATTAGAGGAGGAAAGACGTCGTGAGAACCCAGAGT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 AACTCGAAAAAGAGAAAAGAAATCAATTAGAGGAGGAAAGACGTCGTGAGAACCCAGAGT 1447
Query 1364 CTTACTTAGAGGAGATGCAATCTCAGTACAAGGAAGTGTTGGAGAGAGTTGAGCAGAAGA 1423
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1448 CTTACTTAGAGGAGTTGCAAGCTCAGTACAAGGAAGTGTTGGAGAGAGTTGAGCAGAAGA 1507
Query 1424 AACGTCTGAAAACAAACGGGTCCAGTAACGGGAATAACAAGTCTGGAGGTGTTGGGCGAG 1483
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1508 AGCGTCTGAAAACAAACGGGTCCAGTAACGGGAATAACAAGTCTGGAGGTATTGGGCGAG 1567
Query 1484 GCGAGCGACTAAGCGCTGCACAGAGGGAGAGAATGCGTCTGCTGACGACAGCAGCCTTTG 1543
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 GCGAGCGACTCAGTGCTGCACAGAGGGAGAGAATGCGTCTGCTGACGACAGCAGCCTTTG 1627
Query 1544 ATAGAGGGAAAGGCGAGGATACGTTTGGTACTAGAGATGAAGATTGGCAGCTCTACAAAC 1603
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1628 ATAGAGGGAAAGGCGAGGATACGTTTGGTTCTAGAGATGAAGATTGGCAGCTCTACAAAC 1687
Query 1604 TTATGAGCAAAGATAATGACGACGATGACGAACAACCTGATTCAGACGAGGCTGAGTTGG 1663
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1688 TTATGAGCAAGGATAATGACGATGATGACGAACAACCTGATTCAGACGAGGCAGAGTTGG 1747
Query 1664 CTCGTTTATCATCTAGACTTCAGGAAATAGACCCAACATTTGTGCAGAAAGTAGAAGGAG 1723
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1748 CTCGTTTATCATCTAGACTTCAGGAAATTGATCCAACATTTGTGCAGAAAGTAGAAGGAG 1807
Query 1724 AATCGAGTCAGACTTCAGGGGAGGTGCCACGCGTACGTCCGTTAACAGAGGAAGACTACA 1783
||| ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1808 AATTGAGTCAGACATCAGGGGAGGTGCCACGCGTACGCCCATTAACAGAGGAAGACTACA 1867
Query 1784 AGATAGTGATTGGTATTGAAAGATTCCGTTGCCCTGAGATCCTGTTCCATCCAAACCTTA 1843
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 AGATAGTGATTGGTATAGAAAGATTCCGTTGCCCAGAGATCCTGTTCCATCCAAACCTTA 1927
Query 1844 TTGGCATTGACCAAGTAGGCTTAGACGAGATGGCCGGTACATCAATCAGAAGGCTACCGC 1903
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1928 TTGGTATTGACCAAGTAGGCTTAGACGAGATGGCTGGCACATCAATCAGAAGGCTACCGC 1987
Query 1904 AGGACGAGAAAGAGATAGAGGAGAGGCTAACGAGCTCGATACTGATGACGGGCGGGTGTA 1963
| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1988 ACGACGAGAAAGAGTTAGAGGAGAGGCTAACGAGCTCGATACTAATGACGGGCGGGTGTA 2047
Query 1964 GCCTTCTTCCAGGGATGAAAGAGCGGTTGGAATGTGGGATTAGGATGATAAGACCGTGCG 2023
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2048 GCCTTCTTCCAGGGATGAACGAGCGGTTGGAATGTGGGATTAGGATGATAAGACCTTGCG 2107
Query 2024 GATCACCCAT-AGACGTGGTTCGAGCTATGGATCCAGTGCTGGATGCATGGCGTGGAGCA 2082
|||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2108 GATCACCCATTA-ACGTGGTTAGAGCTATGGATCCAGTGCTGGATGCATGGCGAGGAGCA 2166
Query 2083 TCTGCGTTTGCTGCTAATTTGAACTTCTTGGGGAATGCTTTTACTAAGACGGATTACTAC 2142
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 2167 TCTGCATTTGCTGCTAATTTGAACTTCTTGGGGAATGCCTTTACTAAGATGGATTACGAC 2226
Query 2143 GAGAAAGGTGAAGATTGGCTTAGAAAATATCAAATTCGATACAATTATTTGTGATTCCT- 2201
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2227 GAGAAAGGTGAAGATTGGCTTAGAAATTATCAAATTCGATACAACTATTTGTGATTCCTC 2286
Query 2202 -A-TTGCTATTAATTGT 2216
| ||||||||||||||
Sbjct 2287 CAGTTGCTATTAATTGT 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109939193550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5