BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928964
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12400.1 | Symbols: ELC, ATELC | Ubiquitin-conjugating enzym... 1929 0.0
> AT3G12400.1 | Symbols: ELC, ATELC | Ubiquitin-conjugating enzyme/RWD-like
protein | chr3:3944296-3945851 REVERSE LENGTH=1556
Length=1556
Score = 1929 bits (1044), Expect = 0.0
Identities = 1178/1243 (95%), Gaps = 7/1243 (1%)
Strand=Plus/Plus
Query 1 CTTCCACCGCCGACACCGTTTTACTCCGATGGTTCCTCCGCCGTCGAATCCGCAGCAGAT 60
|||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||| |
Sbjct 28 CTTCCAACGCCGACACCGTTTAACTCCGATGGTTCCCCCGCCGTCTAATCCGCAGCAGGT 87
Query 61 TCAGCAGTTCCTCTCTTCCGCGCTCTCCCAGCGCGGTCCATCTTCAGTTCCCTACGAAGA 120
||||||||||||||| || || |||||||||||||| ||||||||||| |||||||||||
Sbjct 88 TCAGCAGTTCCTCTCCTCTGCCCTCTCCCAGCGCGGCCCATCTTCAGTCCCCTACGAAGA 147
Query 121 GTCCAACAAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCCTCTTACCCTTCCTT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 GTCCAACAAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCTTCTTACCCTTCCTT 207
Query 181 AGAGCCCAAAACGGCATCGTTTATGCACAACGATGGCCGGTCCGTCAATCTCCTTCAAGC 240
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 208 AGAGCCCAAAACGGCATCGTTTATGCACAACGATGGTCGCTCCGTCAACCTCCTTCAAGC 267
Query 241 AGATGGTACGATCCCGATGCCTTTCCATGGAGTCACCTATAACATCCCTGTAATCATCTG 300
|||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||
Sbjct 268 AGATGGTACGATTCCGATGCCTTTTCATGGAGTCACCTATAACATACCTGTGATTATCTG 327
Query 301 GCTCCTCGAATCTTATCCTCGTCATCCTCCTTGCGTCTATGTGAATCCCACCGCTGATAT 360
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GCTCCTCGAGTCATATCCTCGTCATCCTCCTTGCGTCTATGTGAATCCCACCGCTGATAT 387
Query 361 GATCATAAAGCGACCTCACGCACATGTTACTCCTTCTGGTCTCGTTTCTCTTCCTTATCT 420
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 388 GATCATCAAGCGACCTCACGCACATGTCACTCCTTCTGGTCTCGTTTCTCTTCCGTACCT 447
Query 421 TCAGAATTGGGTTTTCCCTAGCTCAAATCTCGTAGATCTCGTCTCCGATCTCAGCGCTGC 480
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 448 TCAGAATTGGGTCTACCCTAGCTCCAATCTCGTAGATCTCGTCTCCGATCTCAGCGCTGC 507
Query 481 TTTTGCTCGTGATCCGCCTCTTTATTCACGACGCCGTCCTCAGCCGCCTCCACCGTCTCC 540
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 508 TTTTGCTCGTGATCCGCCTCTTTATTCTCGACGCCGTCCTCAGCCACCGCCACCGTCTCC 567
Query 541 TCCTACTGG-ATACGATTCGTCTCTGACACGACCTCCTTCTGCTGATCAGTCATTAG-CT 598
|||||| || |||||||||||||||| ||||||||||||| |||||||||||||| | ||
Sbjct 568 TCCTAC-GGTATACGATTCGTCTCTGTCACGACCTCCTTCGGCTGATCAGTCATT-GCCT 625
Query 599 AGACCGTTCCCGCCATCACCTTACGGTGGAGGAG---GTAGGGTGCAAGTGCAGCATGTT 655
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 626 AGACCGTTCCCGCCATCACCTTACGGCGGAGGAGTAAGTAGGGTGCAAGTGCAGCATGTT 685
Query 656 CACCACCAGCAGCAATCGGATGATGCTGCGGAGGTTTTCAAGAGAAACGCGATCAATAAG 715
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 686 CACCACCAGCAGCAATCTGATGATGCGGCGGAGGTTTTCAAGAGAAATGCGATTAATAAG 745
Query 716 ATGGTGGAGATGGTTCACGGCGATTTGGTTTCGATGAGGAGAGCCAGAGAAGCTGAAGCA 775
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ATGGTGGAGATGGTTCATAGCGATTTGGTTTCGATGAGGAGAGCCAGAGAAGCTGAAGCA 805
Query 776 GAGGAGCTACTGAGTTTGCAAGCTGGGCTgaagagaagagaggaagagattaatataggt 835
|||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 806 GAGGAGCTGCTGAGCTTGCAAGCTGGGCTGAAGAGAAGAGAGGATGAGCTTAATATAGGG 865
Query 836 ttgagagagatggttgaggagaaagaaACACTTGAACAACAATTACAGGTTATCTCCATG 895
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 866 TTGAAAGAGATGGTTGAGGAGAAAGAAACACTTGAACAACAATTACAGATTATCTCCATG 925
Query 896 AACACTGATATTCTAGATTCTTGGGTTAGAGAGAACCAAGGCAAAACCAAGAATTTAGTT 955
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 926 AACACTGATATTCTAGACTCGTGGGTTAGAGAGAACCAAGGCAAAACCAAGAATTTAGTT 985
Query 956 GATTTGGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GATTTGGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAG 1045
Query 1016 TGTACTGCTTCGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAA 1075
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TGTACTGCTTTGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAA 1105
Query 1076 GACGGAGTTGTTCCCTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGAGAGAACAG 1135
|| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1106 GATGGTGTTGTTCCCTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGAGAACAG 1165
Query 1136 TTCTTCCACCGAGCCACGGGTTCTAAAGTCAGAGCGGCACAGATGGAGGTTCAGGTTGCA 1195
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1166 TTCTTCCACCGAGCCACGGGTTCTAAAGTCAGGGCGGCACAAATGGAGGTTCAGGTTGCA 1225
Query 1196 GCGATCGCAGGTAGGTTACATTCGTGAATGAAATTCAGTGTTT 1238
|| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1226 GCCATCGCAGGTAGGTTACATTCATGAATGAAATTCAGTGTTT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5