BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928970
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12490.2 | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3... 933 0.0
> AT3G12490.2 | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3:3960401-3961915
REVERSE LENGTH=866
Length=866
Score = 933 bits (505), Expect = 0.0
Identities = 604/652 (93%), Gaps = 5/652 (1%)
Strand=Plus/Plus
Query 1 TTTAGGGTTCTGCAACGACGACATGGCTTTACTCGGTGGCGTTCGCGATGTTCCTGCTAA 60
|||||| ||||||||||| || ||||||||| |||| || ||| ||||||| ||||||||
Sbjct 117 TTTAGGCTTCTGCAACGAAGAGATGGCTTTAGTCGGAGGTGTTGGCGATGTCCCTGCTAA 176
Query 61 CCAGAACAGTGGTGAGGTCGAGAGCCTCGCTCGTTTCGCTGTCGATGAGCACAACAAGAA 120
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 TCAGAACAGTGGTGAGGTTGAGAGCCTCGCTCGTTTCGCTGTCGATGAACACAACAAGAA 236
Query 121 AGAGAATGCACTTCTTGAGTTTGCTAGAGTGGTGAAAGCTAAAGAACAAGTTGTAGCCGG 180
|||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 237 AGAGAATGCACTTCTTGAGTTTGCGAGAGTTGTGAAGGCGAAAGAACAAGTTGTAGCCGG 296
Query 181 AACAATGCATCACCTGACTCTGGAGATTCTCGATGCAGGGGAGAAAAAGCTTTACGAAGC 240
|||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 297 AACACTGCATCACCTGACTCTGGAGATTCTCGAGGCAGGACAGAAGAAGCTTTACGAAGC 356
Query 241 CAAAGTGTGGGTGAAGTCATGGTTGAACTTTAAGGAGTTACAGGAGTTCAAGCCTGCCGC 300
|||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| ||
Sbjct 357 CAAAGTGTGGGTCAAGCCGTGGTTGAACTTTAAAGAGTTACAGGAGTTCAAGCCT---GC 413
Query 301 CAGTGATGCCCCTGCAATCACTCCCTCCGATCTTGGCTGCAAACAAGATGAACATGAATC 360
||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 414 CAGTGATGCCCCTGCTATCACTTCCTCCGATCTTGGCTGCAAGCAAGGTGAACATGAATC 473
Query 361 TGGATGGAGGGAAGTTCCAGGAGATGATCCAGAAGTGCAGCACGTTGCTGAGCATGCTGT 420
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||
Sbjct 474 TGGATGGAGGGAAGTTCCCGGAGATGATCCAGAAGTGAAGCATGTTGCTGAGCAGGCTGT 533
Query 421 CAAGACCATCCAGCAGAGGTCTAACTCCTTGTTCCCTTATCAACTTCTGGAGGTTGTGCA 480
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 CAAGACCATTCAGCAGAGGTCTAACTCCTTGTTCCCTTATGAACTTCTGGAGGTTGTGCA 593
Query 481 TGCTAACGCTGAGGTTACCGGCGAGGCTGCCAAATACAACATGCTGCTGAAGTTGAAGAG 540
|||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 594 TGCTAAAGCTGAGGTAACCGGCGAGGCTGCAAAATACAACATGCTACTGAAGTTGAAGAG 653
Query 541 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 713
Query 601 -CTTCAACCGCATGGAGCAACACCATGACTAGTCCCTCTCCCCTGTTTATGT 651
|| ||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 714 TCT-CAACCACGCGGAGCAACACCATGACTAGTCCCTCTCCTTTGTTTATGT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5