BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928973
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12530.1 | Symbols: PSF2 | PSF2 | chr3:3972346-3974195 REVER... 1057 0.0
> AT3G12530.1 | Symbols: PSF2 | PSF2 | chr3:3972346-3974195 REVERSE
LENGTH=952
Length=952
Score = 1057 bits (572), Expect = 0.0
Identities = 633/662 (96%), Gaps = 5/662 (1%)
Strand=Plus/Plus
Query 1 TTTCTTGAGATAATACATCAATGGCTGGCCAGACTGATCCTCATATTTCACTTTTTTCTC 60
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 45 TTTCTTGAG---ATACATCAATGGCTGGCCAGACTGATCCTCATATTTCACTGTTTTCTC 101
Query 61 CACAAGAGGTTGAGTTTATGGCAGAGGACGAACTGGTGGAGATTGTTCCTAATATGAACA 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 102 CACAAGAGGTTGAGTTTATGGCAGAGGACGAGCTGGTCGAGATTGTTCCTAATATGAACA 161
Query 121 TGGAGCAACTCAATTTCATCAGTGGGGATTTCGGTCGGTTCATTCCTCAGATTCCGACAA 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 162 TGGAGCAACTCAATTTCATCAGTGGCGATTTCGGTCGGTTCATTCCTCAGATTCCGACAA 221
Query 181 AGGTGCCTCTGTGGCTTGCAGTGGCACTGAAGAGGAGAGGCAAATGCACTTTCCGGCCTC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 222 AGGTGCCTCTGTGGCTTGCAGTGGCACTGAAGAGGAGAGGAAAATGCACTTTCCGGCCTC 281
Query 241 CTGGATGGATGTCTGTTGATAATTTGACTCAGATCTTGGAAGCAGAACGTGAATCTCAGT 300
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CGGGGTGGATGTCTGTTGATAATTTGACTCAGATCTTGGAAGCAGAACGTGAATCTCAGT 341
Query 301 CGACATTTCAGGCATTACCATTTAGTTACGTGGAGATTGCCAGACTACTTTTTGACCATG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 CGACATTCCAGGCATTACCATTTAGTTACGTGGAGATTGCCAGACTACTTTTTGACCATG 401
Query 361 CACGTGATGATATTCCAGACATGTATATGGTGAGATCCCTAGTTGAGGATATCAGAGATG 420
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 402 CACGTGACGATATTCCAGACATGTATATGGTGAGATCCCTAGTCGAGGACATCAGAGATG 461
Query 421 TGCGCCTTCACAAACTCGAGACTAACTTGGGATCATTTCAAGGTACTTCTGCAGTAAAGA 480
| || ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 462 TACGGCTTCACAAACTTGAGACTAACTTAGGATCATTTCAAGGTACATCTGCAGTAAAGA 521
Query 481 TCTCTAATGTATCGGCAATGGAAGTGAACATAGTCCGACCATTTGTGATAAGAGCCTTAG 540
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 522 TCTCTAATGTATCGGCAATGGAAGTAAACATAGTACGCCCATTTGTGATAAGAGCCTTAG 581
Query 541 AAGCATTTTACAAGCATGACAAGCCAGAGGCTGATGTAGACCGAGACACCAGAAGTAGTA 600
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 582 AAGCATTTTATAAGCATGACAAGCCAGAGGCTGATGTAGACAGAGACACCAGAAGTAGTA 641
Query 601 GACAACAGCGTGAAGCCAACAATGAACCAAGGAGGCC-CTTAAGGCAACGCTAGGGAGCT 659
|||||||||||||| ||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 642 GACAACAGCGTGAAACCAACAATGAACCAAGGAGACCTCT-AAGGCAACGCTAGGTAGCT 700
Query 660 TC 661
||
Sbjct 701 TC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5