BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928995
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12720.1 | Symbols: ATY53, ATMYB67, MYB67 | myb domain prote... 1074 0.0
> AT3G12720.1 | Symbols: ATY53, ATMYB67, MYB67 | myb domain protein
67 | chr3:4043310-4044609 REVERSE LENGTH=1108
Length=1108
Score = 1074 bits (581), Expect = 0.0
Identities = 638/666 (96%), Gaps = 2/666 (0%)
Strand=Plus/Plus
Query 1 CTTGTAATATATAAACCAGGAAGATGAGAGAGAAATGGGAAACGAAAAGAGATGAAATGG 60
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 65 CTTGTAATATATAAGTTAGGAAGATGAGAGAGAAGTGGGAAATGAAAAGAGATGAAATGG 124
Query 61 GACATCGATGCTGTGGAAAACACAAAGTGAAGAGAGGGCTTTGGTCTCCAGAGGAAGACG 120
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 125 GACATCGATGTTGTGGAAAACACAAAGTGAAGAGAGGTCTTTGGTCTCCAGAGGAAGACG 184
Query 121 AGAAGCTTCTTCGTTATATCACCACTCATGGTCATCCTAGTTGGAGTTCCGTTCCAAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AGAAGCTTCTTCGTTATATCACCACTCATGGTCATCCTAGTTGGAGTTCCGTTCCAAAGC 244
Query 181 TTGCCGGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TTGCCGGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGC 304
Query 241 CTGATCTGAAAAGAGGTACGTTTAACGCGGAGGAAGAGCAGATTATCATCGATGTACATC 300
||||||||| |||||| ||||||| | ||| |||||||||||||||||||| |||||||
Sbjct 305 CTGATCTGAGGAGAGGTTCGTTTAATGAGGAAGAAGAGCAGATTATCATCGACGTACATC 364
Query 301 GTATTCTCGGTAACAAATGGGCTCAAATTGCTAAGCACTTACCTGGACGCACTGATAATG 360
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 365 GTATTCTTGGTAACAAATGGGCTCAGATTGCTAAGCACTTACCTGGACGCACTGATAATG 424
Query 361 AAGTCAAGAACTTTTGGAACTCATGCATTAAGAAGAAGCTTCTTTCTCAAGGCTTAGATC 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 425 AAGTCAAGAACTTTTGGAACTCATGCATTAAGAAGAAACTTCTTTCTCAAGGCTTAGATC 484
Query 421 CTTCTACACATAATCTTATGCCTTCACACAAAAGATCTTCTTCTTCTAATCA-TAATAAT 479
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 485 CTTCTACACATAATCTTATGCCTTCACACAAAAGATCTTCTTCTTCAAA-CAATAATAAT 543
Query 480 ATTCCCAAGCCAAACAAAACGACGTCCATCATGAAGAACCCTACTGATCTTGATCAATCA 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ATCCCCAAGCCAAACAAAACGACGTCCATCATGAAGAACCCTACTGATCTTGATCAATCA 603
Query 540 ACCACTGCTTTTTTAATCACAAACATCAATCCTCCCACTTCCACTAAACCAAACAGACTT 599
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 604 ACCACTGCTTTTTCAATCACAAACATCAATCCACCCACTTCCACTAAACCAAACAAACTT 663
Query 600 AAATCTCCCAACCAGACTCCAATCCCATCTCAAACCATGATCCCTATCAATGATACCATG 659
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 664 AAATCTCCTAACCAGACTACAATCCCATCTCAAACCGTGATCCCTATCAATGATAACATG 723
Query 660 TCAAGT 665
||||||
Sbjct 724 TCAAGT 729
Score = 501 bits (271), Expect = 5e-141
Identities = 292/302 (97%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 628 CTCAAACCATGATCCCTATCAATGATACCATGTCAAGTCTTTTAGATGATGAGAATATGA 687
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 731 CTCAAACCATGATCCCTATCAATGATCCCATGTCAAGTCTTTTAGATGATGAGAATATGA 790
Query 688 TTCCTAATTGGTCAGATGTTGATGGAACGGCGATCCACGAAGCTCCGATGTTGCC-GGCT 746
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 791 TTCCTCACTGGTCAGATGTTGATGGAATGGCGATCCACGAAGCTCCGATGTTGCCTAG-T 849
Query 747 GATAAGGCAGTAGTGGGAGTGGATGATGATGATCTCAACATGGACATTTTGTTTAATACT 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 850 GATAAGGCAGTAGTGGGAGTGGATGATGATGATCTCAACATGGACATTTTGTTTAACACT 909
Query 807 CCCTCTTCTTCTGCTTTTGATCCTGATTTTGCTTCCATTTTCTCCTCTGCAATGTCTATC 866
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CCTTCTTCTTCTGCTTTTGATCCTGATTTTGCTTCCATTTTCTCCTCTGCAATGTCTATC 969
Query 867 GATTTCAACCCCATGGATGATCTTGGCAGCTGGACCTTTTAGCTTTTACTCTACAATATT 926
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GATTTCAATCCCATGGATGATCTTGGCAGCTGGACCTTTTAGCTTTTACTCTACAATATT 1029
Query 927 TT 928
||
Sbjct 1030 TT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5