BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928996
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12730.1 | Symbols: | Homeodomain-like superfamily protein ... 1177 0.0
> AT3G12730.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:4047072-4048614 REVERSE LENGTH=1128
Length=1128
Score = 1177 bits (637), Expect = 0.0
Identities = 709/744 (95%), Gaps = 3/744 (0%)
Strand=Plus/Plus
Query 1 GCATTTA--A-TTTGTTAGTTGAATGATGCAGTCGAGAGATGAGATGAGAGATGAGTCAT 57
||||||| | |||||||||| |||||||||||||||||| ||||| |||||||| ||||
Sbjct 236 GCATTTAGTACTTTGTTAGTTAAATGATGCAGTCGAGAGAGGAGATCAGAGATGATTCAT 295
Query 58 CATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACTGAGCTTC 117
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 296 CATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTC 355
Query 118 ATGAACGCTTCGTTGACGCCGTCTCTCACCTTGGAGGCCCTGACAAGGCTACACCAAAGA 177
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 356 ACGAACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGA 415
Query 178 CGATAATGAGAGTAATGGGTGTGAAGGGTCTCACGCTTTATCATCTCAAGAGCCATCTCC 237
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 CAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCATCTCAAGAGCCATCTCC 475
Query 238 AGAAGTTCAGACTTGGAAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTAGTA 297
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 AGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTA 535
Query 298 TTAGAGACACAAATAGAGCTTCCATGTTGGATCTTCGAAGGAATGGTGTATTCACGACTA 357
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 536 TTAGAGATACAAATAGAGCTTCCATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTA 595
Query 358 GTCCGCTGATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAG 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAG 655
Query 418 AGGAAGAAGTAGAAATAGAAAGACAGGTGAACCAAAGGATAGAAGCACAAGGGAAATACA 477
||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 656 AGGAAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACA 715
Query 478 TGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAGCCTCACTAAAGACTACT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAGCCTCACTAAAGACTACT 775
Query 538 CTACTCTCTTTTTCGACCGCACCAATATTTGTAACAGCACATCGTCCATCCCAATCCCAT 597
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 CTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCAT 835
Query 598 GGTTCGAGGATCATTTTCCTTCCTCTTCCTCCATGGACTCTGCGTTGATTCTCCCTGACA 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 836 GGTTCGAGGATCATTTTCCTTCCTCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACA 895
Query 658 TCAATTCCAACTTCTCCCTGCAAGATTCTTGGAGTTCGATCACAAAGGGTCGTACGGTTT 717
||||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||||
Sbjct 896 TCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTT 955
Query 718 GTCTCGGTTAGAGAAGACATATAT 741
||||||||||||||||| ||||||
Sbjct 956 GTCTCGGTTAGAGAAGAGATATAT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5