BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928998
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12750.1 | Symbols: ZIP1 | zinc transporter 1 precursor | ch... 1736 0.0
> AT3G12750.1 | Symbols: ZIP1 | zinc transporter 1 precursor |
chr3:4051651-4053201 REVERSE LENGTH=1412
Length=1412
Score = 1736 bits (940), Expect = 0.0
Identities = 1053/1109 (95%), Gaps = 2/1109 (0%)
Strand=Plus/Plus
Query 1 AACACAAATATCTTAAACTCATGTCTGAATGTGGCTACTTTTCAGCAACAACTATGTTGA 60
|||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 26 AACATAAATATCTTAAACTCATGTCTGAATGTGGATGTTTTTCGGCAACAACTATGTTGA 85
Query 61 GAATTTGTGTAGTCTTAATAATATGTTTACATATGTGTTGTGCCTCGAGTGATTGTACAA 120
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 86 GAATTTGTGTAGTATTGATAATATGTTTGCATATGTGTTGTGCCTCGAGTGATTGTACAA 145
Query 121 GCCACGATGATCCTGTGTCTCAAGAGGAAGCAGAGAAAGCGACAAAGCTGAAGCTTGGTT 180
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 146 GTCACGATGATCCTGTGTCTCAAGACGAAGCAGAGAAAGCGACGAAGCTAAAGCTTGGTT 205
Query 181 CGATCGCTTTACTTCTTGTGGCCGGAGGTGTCGGCGTGAGTCTACCGTTGATCGGGAAAA 240
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 206 CGATAGCTTTACTTCTTGTAGCCGGAGGAGTCGGCGTGAGTCTACCGTTGATCGGGAAAA 265
Query 241 GGATTCCGGCGTTACAACCGGAAAACAATATCTTCTTCATGGTGAAAGCTTTTGCTGCAG 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 266 GGATTCCGGCGTTACAACCGGAAAATGATATCTTCTTCATGGTGAAAGCTTTTGCTGCAG 325
Query 301 GAGTGATCCTCTGCACAGGTTTCGTTCATATCTTACCAGACGCGTTCCAGAGATTGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 326 GAGTGATCCTCTGCACAGGTTTCGTTCATATCTTACCAGACGCGTTCGAGAGATTGAGCT 385
Query 361 CTCCATGTCTCCAGGACACTACAGCTGGAAAGTTCCCGTTTGCGGGTTTCGTAGCGATGC 420
|||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 386 CTCCATGTCTTGAGGACACTACAGCTGGGAAGTTCCCGTTTGCTGGTTTTGTAGCGATGC 445
Query 421 TGTCGGCGATGGGGACTCTTATGATCGACACATTCGCGACAGGGTATTACAAGAGGCAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGTCGGCGATGGGGACTCTTATGATCGACACATTCGCGACAGGGTATTACAAGAGGCAAC 505
Query 481 ATTTTAACAGTAAC-AGTGGGAGCAAGCAAGTGAACGTAGTCGTAGACGAAGAAGAGCAT 539
|||||| || |||| | |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 506 ATTTTAGCAATAACCA-TGGGAGCAAGCAAGTGAACGTAGTAGTAGATGAAGAAGAGCAT 564
Query 540 GCGGGCCATGTTCACGTTCACACGCACGCGAGTCACGGACACACACATGGCTCGACCGAG 599
||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 565 GCGGGTCATGTTCACATTCACACGCACGCTAGTCACGGACACACACATGGTTCGACCGAG 624
Query 600 TTGATCAGAAGACGCATAGTGTCGCAGGTGCTTGAGATTGGGATAGTTGTGCATTCGGTT 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGATCAGAAGACGTATAGTGTCGCAGGTGCTTGAGATTGGGATAGTTGTGCATTCGGTT 684
Query 660 ATAATAGGGATATCACTTGGAGCTTCACAGAGCATAGACACCATAAAGCCACTCATGGCT 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ATTATAGGGATATCACTTGGAGCTTCACAGAGCATAGACACCATAAAGCCACTCATGGCT 744
Query 720 GCTCTCTCTTTCCATCAGTTCTTTGAAGGTCTTGGCCTCGGTGGATGCATCTCCATGGCG 779
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 745 GCACTATCTTTCCATCAGTTCTTTGAAGGTCTTGGCCTCGGTGGATGCATCTCCCTGGCG 804
Query 780 GAGATGAAGTCGAAATCAACAGTGATAATGGCGACATTTTTCTCGGTAACAGCGCCACTT 839
|| |||||||||||||| |||||| |||||||||||||||||||||| || |||||||||
Sbjct 805 GATATGAAGTCGAAATCGACAGTGCTAATGGCGACATTTTTCTCGGTGACGGCGCCACTT 864
Query 840 GGGATAGGAATAGGGTTGGGGATGTCGAGTGGTTTAGGGTACAGGAAAGAGAGCAAAGAG 899
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 865 GGGATAGGAATAGGGTTGGGGATGTCAAGTGGTTTAGGCTACAGGAAAGAGAGCAAAGAG 924
Query 900 GCAATTATGGTGGAAGGAATGCTGAATGCTGCATCTGCTGGGATACTCATTTACATGTCA 959
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 925 GCAATAATGGTGGAAGGAATGTTGAATGCTGCATCTGCTGGGATACTCATATACATGTCA 984
Query 960 CTTGTTGATCTTCTTGCTCCTGATTTTATGAATCCAAGATTGCAATCCAATCTCTGGCTT 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 985 CTTGTTGATCTTCTTGCTACTGATTTTATGAATCCAAGATTGCAATCCAATCTCTGGCTT 1044
Query 1020 CACTTGGCCGCTTATCTCTCTCTCGTCCTAGGCTCTGCTTCCATGTCTCTCCTTGCCATC 1079
|||||||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct 1045 CACTTGGCTGCTTATCTCTCTCTCGTCCTAGGCGCAGGTTCCATGTCTCTCCTCGCCATC 1104
Query 1080 TGGGCCTGATTCTTGAGCTGCAACTAACA 1108
|||||||||||||||| ||| ||||||||
Sbjct 1105 TGGGCCTGATTCTTGATCTGAAACTAACA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5