BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929007

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12850.1 | Symbols:  | COP9 signalosome complex-related / CS...   673    0.0  


> AT3G12850.1 | Symbols:  | COP9 signalosome complex-related / 
CSN complex-related | chr3:4088374-4090303 REVERSE LENGTH=1104
Length=1104

 Score =  673 bits (364),  Expect = 0.0
 Identities = 512/581 (88%), Gaps = 19/581 (3%)
 Strand=Plus/Plus

Query  27   TATTCACGAAACTACAAAGGACGAAACCTAGTGCAAAAGCTACTTCATATCGCAGAGAAT  86
            ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||| 
Sbjct  46   TATTCACGAAACTACGAAGGACGAAACCTAGTGCTGAGGCTACTTCATATCGCAGAGAA-  104

Query  87   TGTGTTGGGCTGTTGGCCCGATGTTCAGTGATGATTTGGAATTTGAATTCCTTCGACTTG  146
                ||   |||||||||||||||||| ||| ||||||||| |||||  |||||||||||
Sbjct  105  ----TT---CTGTTGGCCCGATGTTCACTGACGATTTGGAACTTGAAGCCCTTCGACTTG  157

Query  147  CCTATAATCTTATCCGGAATGACGGAATCGTATGTGACATGCATTTGTTCACAGTTATAG  206
            ||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct  158  CCTATGATCTTATCCGGAATGACGGAATTGTCTGTGACATGCGTTTGTTCACAGTTATAG  217

Query  207  CTGAAAGGATACAAGGCAAATTAGCAGAAGGTTATCTCTTGGATGAACAATGGCGTCTTA  266
            ||||||  |||||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct  218  CTGAAAAAATACAAGGCAGATTAGGAGAAGGTTATCTCTTGGATGAAAAATGGCGTCTTA  277

Query  267  CTAAGGACAACAACTTT-GTCAAACAAGACAACATTCTAAGAGACGAGTTAGAAA-TAGC  324
            ||||| ||||||| ||| ||||||||||||| |||||||||| |||| ||||||| | ||
Sbjct  278  CTAAGAACAACAA-TTTCGTCAAACAAGACAGCATTCTAAGAAACGACTTAGAAAGT-GC  335

Query  325  TACGGACGAATTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGCCTCCATTACCACTA  384
            |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  336  TACGGACGAACTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGGCTCCATTACCACTG  395

Query  385  TGGCCAAATGGCAATCGTTTTCCGATCATTTACCCGGCAGGTTCAAACTGTCGATGTTTA  444
            |||||||||||| |||||||||||| ||| | |||||||||| |||||| |||||| |||
Sbjct  396  TGGCCAAATGGCGATCGTTTTCCGACCATATCCCCGGCAGGTCCAAACTATCGATGCTTA  455

Query  445  TATGGCTACTCTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCGTCACCGAAG  504
             |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  456  CATGGCTACACTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCCCCACCGAAG  515

Query  505  TGTCGAGCAAATAGCTTACTGCCACG-AAAAAGGG-AGTACGTACGGGTTCAAACTCGAC  562
            |||||| || |||||||||||| ||| |||||||| | ||  |  || |||||| | |||
Sbjct  516  TGTCGAACAGATAGCTTACTGCAACGTAAAAAGGGCA-TA--T--GGCTTCAAAATTGAC  570

Query  563  TGCGTTAAGTCTCTTGCGGATCTCTTGGAAAACGAGTATCA  603
            ||| ||||||||||| |  |||| || |||| | |||||||
Sbjct  571  TGCTTTAAGTCTCTTTCTAATCTTTTAGAAAGCAAGTATCA  611



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5