BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929009

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   977    0.0  


> AT3G12870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G56120.1); 
Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4094417-4095037 
REVERSE LENGTH=621
Length=621

 Score =  977 bits (529),  Expect = 0.0
 Identities = 595/626 (95%), Gaps = 8/626 (1%)
 Strand=Plus/Plus

Query  21   ATGGCGTCAGATCAGAGCACAAATCCACCGATCATGGAGCCAAAGACGAGACATCCTCTT  80
            |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct  1    ATGGCGTCAGATCAGAGCACGAATCCACCGATCATGGAGGCAAAGACAAGACATCCTCTT  60

Query  81   CACCAGATCGCAGATACACCAACACACAAGCTTCTCCTGAAACAATGGTTAAAAGAAGAA  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CACCAGATCGCAGATACACCAACACACAAGCTTCTCCTGAAACAATGGTTAAAAGAAGAA  120

Query  141  GAGCTAATCCTCAGCCGTGTCTCTCACAAAGAATCTCAGATCGATTCCGTTCGAAGAGAA  200
            |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GAGCTAATTCTAAGCCGTGTCTCTCACAAAGAATCTCAGATCGATTCTGTTCGAAGAGAA  180

Query  201  ATCACTCAGCTTTATAtcttcttctttctcttccactccatttctctgctacttctcttc  260
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCACTCAGCTCTACATCTTCTTCTTTCTCTTCCACTCCATTTCTCTGCTACTTCTCTTC  240

Query  261  cacgcctcttcttcATCATCACCTTCCTCTGCTTCTGCTTCCAGTGCTTGTAAAAGATCA  320
            ||||| | | ||||||| ||| ||||||||||||||  | ||||||||||||||||||||
Sbjct  241  CACGC-T-T-CTTCATCCTCATCTTCCTCTGCTTCT--T-CCAGTGCTTGTAAAAGATCA  294

Query  321  TGGATCCCTTCACTTTGCGCTCTGCTATCTTCGTTGGGAATCATTTGGGCGGTGA-GGTA  379
            |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | ||||
Sbjct  295  TGGATCCCTTCACTCTGCGCTCTGCTATCTTCCTTGGGGATCATTTGGGCGGT-ACGGTA  353

Query  380  CAAATCGGAAGTGGAATCGCATCTTGAGAAGTTGTTAGAGAGGGAGAAAGAAGATGCGAA  439
            |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  354  CAAATCTGAAGTGGAATCGCATCTTGAGAAGTTGTTGGAGAGGGAGAAAGAAGATGCGAA  413

Query  440  GCTGTTGCGTAAATGTGTTGAAGAGTTGAAGAAGAAAGGTATCGAATTTGATTTGCTTAA  499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  GCTGTTGCGTAAATGTGTTGAAGAGTTGAAGAAGAAAGGTATCGAATTTGATTTGCTTAA  473

Query  500  GGAAGTTGATGCTCTTCGTAGAGCAAAGAGTTTGAGAGTTGAGTCCAAGCCTGTGAGGAA  559
            |||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct  474  GGAAGTGGATGCGCTTCGTAGAGCCAAGAGTTTAAGAGTTGAGTCGAAGCCTGTGAAGAA  533

Query  560  ATGGTCTGCTAGGGATTTTGTGACGCTCTTCTTCTTCTCTGTTTCGTGTTTGGTTCTTGC  619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  ATGGTCTGCTAGGGATTTTGTGACGCTCTTCTTCTTCTCTGTTTCGTGTTTGGTTCTTGC  593

Query  620  CATGATTAGGCTTATTCTCTGCGATT  645
            ||||||||| || |||||||||||||
Sbjct  594  CATGATTAGACTCATTCTCTGCGATT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32250322374


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5