BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929016
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12930.1 | Symbols: | Lojap-related protein | chr3:4128407-... 1003 0.0
> AT3G12930.1 | Symbols: | Lojap-related protein | chr3:4128407-4129956
FORWARD LENGTH=1115
Length=1115
Score = 1003 bits (543), Expect = 0.0
Identities = 687/752 (91%), Gaps = 27/752 (4%)
Strand=Plus/Plus
Query 9 ACCAGCGAGATTAATGGCATCTTCCACCGGTCTCA------CC---G---T-C--GCCGG 53
||||||||||||||||||||||||||||||||||| || | | | |||||
Sbjct 46 ACCAGCGAGATTAATGGCATCTTCCACCGGTCTCACCGTCGCCGGAGCTCTGCTTGCCGG 105
Query 54 AGATTTTCGATTACCAGCTATATCGTCTCTAATACCCAGAAAGACTTCTTCTTCATTGTC 113
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AGATTTTCGATTACCAGCTGTATCGTCTCTAATACCCAGAAAGACTTCTTCTTCATTGTC 165
Query 114 ATGCCTCAACAACAGAG------CG------TATAATTGCTGTTGGCGACTATCCAGAGG 161
|||||| | |||||||| || |||||||||||||||||||||||||||||
Sbjct 166 ATGCCTTAGCAACAGAGATTTATCGTCTCCTTATAATTGCTGTTGGCGACTATCCAGAGG 225
Query 162 CAGAATTTTGACTTCTCTCAGTAAATCACGCAGACTCGCTGTGGGAAAGGAAGCGGAAGA 221
|| ||||||||||||||||||||| ||||| | | | ||||||||||||||||| |||||
Sbjct 226 CAAAATTTTGACTTCTCTCAGTAACTCACGGAAATTTGCTGTGGGAAAGGAAGCAGAAGA 285
Query 222 TGGGTTTCTCTCGAATGTGAGTGAAGATACCGATGAGATGTTCGACGACTTGTTCAACAA 281
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 286 TGGGTTTCTATCGAATGTGAGCGAAGATACTGATGAGATGTTCGACGACTTGTTCAACAA 345
Query 282 ATATGGGAAGGTTGTTTTTAGGAGCAATGATGTAAAGTCTCCAACAGCTGAGGTTGATGA 341
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 346 ATATGGGAAGGTTGTTTTTAGAAGCACTGATGTTAAGTCTCCAACAGCTGAGGTTGACGA 405
Query 342 TGACGCTGAAAGTTTAGCTTTTGCTGTTGAATTGGCTAAAGTTGCGAGTGATGTGAAAGC 401
||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TGATGCAGAGAGTTTAGCATTTGCTGTTGAATTGGCTAAAGTTGCGAGTGATGTGAAAGC 465
Query 402 TGGAGACATTAAGGTCCTCTTTGTGAAGCCTCTTGTCTACTGGACTCGGTTTTTCATCAT 461
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 466 TGGAGATATTAAGGTCCTCTTTGTCAAGCCTCTTGTTTACTGGACTCGGTTTTTCATCAT 525
Query 462 TGCCACTGCGTTTTCCCGCCCCCAAATTGATGCAATCGGATCTAGGATGAGAGACCTGGC 521
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 526 TGCCACTGCGTTTTCCCGCCCTCAAATTGATGCAATAGGATCCAGGATGAGAGACCTGGC 585
Query 522 TGAGAAGAAGTATGGTAAGGTTGCTAACGGAGATGTAAAGCCAAATTCGTGGACATTGTT 581
|||||||||||| || || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 586 TGAGAAGAAGTACGGAAAAGTTGCTAATGGAGATGTAAAGCCAAATTCGTGGACGTTGTT 645
Query 582 AGATTTTGGTGATGTTGTGATCCATTTATTCTTACCTCCGCAAAGGACATTCTATAACTT 641
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGATTTTGGTGATGTGGTGATCCATTTATTCTTACCTCCGCAAAGGACATTCTATAACTT 705
Query 642 GGAAGACTTTTACGGGAATGCTATGCAAATTGAACTTCCCTTTGAGGATCAGTCACCGCC 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 706 GGAAGACTTTTACGGGAATGCTATGCAAATTGAACTTCCCTTTGAGGATCAGTCACAACC 765
Query 702 AAGGAGCTGATATGATGAGACAGTCTGTTCCA 733
| ||| |||||||||||||||||| |||||||
Sbjct 766 ACGGAACTGATATGATGAGACAGTTTGTTCCA 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5