BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929017
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12940.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 2359 0.0
> AT3G12940.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:4130007-4132467
REVERSE LENGTH=2215
Length=2215
Score = 2359 bits (1277), Expect = 0.0
Identities = 1390/1445 (96%), Gaps = 5/1445 (0%)
Strand=Plus/Plus
Query 1 GGAATTCGGTGTATAG-TT--TGATGGCAGGAAATGGAATGCATACACTGGGCCGTGTCA 57
||| || ||||||||| || ||||||||||||||||||||| |||| |||| |||||||
Sbjct 536 GGATTTTGGTGTATAGTTTGATGATGGCAGGAAATGGAATGCCTACATTGGGTCGTGTCA 595
Query 58 AGGTTTGTGATTTAGCTCCCAGTGAAGGTCTACCTTCTGATTCTTACAAGTTAGCAGTGA 117
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 AGGTTTGTGATTTAGTTCCCAGTGAAGGTCTACCTTCTGATTCTTACAAGTTAGCGGTGA 655
Query 118 CTACATTGTCTCAGTCTCTGGCGCAGTACTCTGCAGCCATCATTCAGTTTCCTGCTAGCG 177
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 CTACATTGTCTCAATCTCTGGCACAGTACTCTGCAGCCATCATTCAGTTTCCTGCTAGCG 715
Query 178 ATGGAGCCCTCCTTAGATCCGGTCTTGATTCTGCTCGGCTCTATTTTCACCAGAGAGATT 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 716 ATGGAGCCCTCCTTAGATCCGGTCTTGATTCTGCTCGGCTTTATTTTCACCAGAGAGATT 775
Query 238 CATATCCAGCCACTAATAATATGATCCACACAAATGATTCACAAGAATGGTGCAAGACTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CATATCCAGCCACTAATAATATGATCCACACAAATGATTCACAAGAATGGTGCAAGACTT 835
Query 298 CTGGCTACTATGCAGATCCTCAGTCGTGGCAAGAGAGTTACGAGTACAGACCCGGTTTGA 357
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 836 CTGGCTACTATGCAGATCCTCAGTCGTGGCAAGAGAGTTACGAGTATAGACCTGGTTTGA 895
Query 358 CCCCTACCGAGCCAACCAATTCTATAGATTTCCCTCCAGCTGGTTTGCCTGATATCTTTG 417
| || |||||||||| ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 896 CTCCGACCGAGCCAAGCAATTCTATGGAGTTCCCTCCTGCTGGTTTGCCTGATATCTTTG 955
Query 418 CTTTACTAGGAAAAGCTGCTCGTGTAGTTCTTGATGCCATTGGTTTCTATTTGAACTTGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTTTACTAGGAAAAGCTGCTCGTGTAGTTCTTGATGCCATTGGTTTCTATTTGAACTTGA 1015
Query 478 GAAGCTGTCCATTTACTGAGATTCTCGATAATGTCCCTTTGAGGAATGGTGAGATATCGT 537
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||
Sbjct 1016 GAAGCTGTCCATTTACTGAGATTCTTGATAATGTCCCTTTGAGAAATTGTGAGGTATCGT 1075
Query 538 CCTCTGTGTTATCTGTTTGCTGTTATGCTAGGCCGTCTTTTCATGGAGCACAGCACCATA 597
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1076 CTTCTGTGTTATCTGTTTGCTGTTATGCTAGGCCATCCTTTCATGGAGCACAGCACCATA 1135
Query 598 CCCTAACAGAAGACGAGCAGCTTATCCTGTATGCAGACCATGATCACCAACTTGACAAGA 657
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 GCTTAACAGAAGACGAGCAGCTTATCCTGTATTCAGACCATGATCACCAACTTGACAAGA 1195
Query 658 GTCTGATCTCATTTGTGAAATCAGATAAGGCGGGGTTCCACATCAGGGACATGCACGGTC 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1196 GTCTGATCTCATTTGTGAAATCAGATAAGGCGGGGTTGCACATCAGGGACATGCATGGGC 1255
Query 718 AATGGATTTTAGTTGATGTGGATCTTGGTCCTCAAGAGGCTGTTGTGTACCCGGGGCTAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AATGGATTTTAGTTGATGTGGATCTTGGTCCTCAAGAGGCTGTTGTGTACCCGGGGCTAG 1315
Query 778 CTCTTTACCAGGCTACAGCGGGGTATGTGAGTCCTGCAGTGCACAGAACTGATTTAAACA 837
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1316 CTCTTTACCAGGCTACAGCGGGGTATGTGAGTCCCGCAGTGCACAGAACCGATTTGAACA 1375
Query 838 GTCTGCAAGGAAGTATAGAAGGGAGGTTCTCCCTGGCCTTCAAACTCATGCCAAAATCAA 897
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1376 GTCTGCAAGGAAGTATAGAAGGGAGGTTCTCCTTGGCCTTCAAACTCATGCCAAAATCAA 1435
Query 898 TGACCAATCTGAGTTGCTCAGAGATGAGAGCAGCAGGTCATGGTGTTGAAGCTCAATTTC 957
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1436 TGACCAATCTGAGTTGCTCGGAGATGAGAGCAGCAGGTCATGGTGTTGAAGCTCAGTTTC 1495
Query 958 AGCTTCCGGTTTCAGTCGATGACTTCATGCAGAGATCTCACTCAAATGATGAACTCTTTA 1017
|||| || ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 AGCTCCCCGTTTCTGTTGATGACTTCATGCAGAGATCTCACTCAAATGATGAACTTTTTA 1555
Query 1018 ACAGACAGACTTTGCAAAGCTTCAGCGTCCCTCAATCCCAGGATGGATCAATGAAACAGC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1556 ACAGACAGACTTTGCAAAGCTTCATCGTCCCTCAATCCCAGGATGGATCAATGAAACAGC 1615
Query 1078 T-AAAAAAGCGGAGGAAGAGCGATTCTAGATGCAAACCACTACCACCTTCAAAGCGGCTG 1136
| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1616 TGAAAAAA-CGGAGGAAGAGTGATTCTAGATGCAAACCACTACCACCTTCAAAACGGCTG 1674
Query 1137 AGGTTAGAAGCACAGAGAGTTCTCAAGGAACGAGTTCAGGAGATTGCAGATAAAAAAGGA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AGGTTAGAAGCACAGAGAGTTCTCAAGGAACGAGTTCAGGAGATTGCAGATAAAAAAGGA 1734
Query 1197 ATCAAACTGAGATTCTGCAATCTCAAGGAGTGCGAGAATAACCACAATGTAATGAACAGC 1256
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 ATCAAACTAAGATTCTGCAATCTCAAGGAGTGCGAGAATAACCACAATGTAATGAACAGC 1794
Query 1257 CCTTGTGCTAATATAAGAAGGGAGATCGGGTGGCCGCACGGAGTTCCATTTGTTCATCCT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 CCTTGTGCTAATATAAGAAGGGAGATCGGGTGGCCGCACGGAGTTCCATTTGTTCATCCT 1854
Query 1317 CATGACCTACCCAATAAAGCTAAAATCGGTTTCCTTGAGACATATGAGCCAGGATGGTCT 1376
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1855 CACGACCTACCCAATAAAGCGAAAATCGGTTTCCTTGAGACATATGAGCCTGGATGGTCT 1914
Query 1377 GAAACACATGACATGGAGCTCAGTCTGTCTGAAACCGCTCAGGGAAACCAACATGTGACT 1436
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAAACACATGACATGGAGTTCAGTCTGTCTGAAACCGCTCAGGGAAACCAACATGTGACT 1974
Query 1437 AACTG 1441
|||||
Sbjct 1975 AACTG 1979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5