BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929020
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1814 0.0
> AT3G12970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G56020.1);
Has 2408 Blast hits to 418 proteins in 91 species: Archae
- 0; Bacteria - 41; Metazoa - 198; Fungi - 63; Plants - 125;
Viruses - 13; Other Eukaryotes - 1968 (source: NCBI BLink).
| chr3:4141051-4142548 REVERSE LENGTH=1498
Length=1498
Score = 1814 bits (982), Expect = 0.0
Identities = 1131/1201 (94%), Gaps = 17/1201 (1%)
Strand=Plus/Plus
Query 1 TCTCTCGATATCGACGGTAAATGGCGTCGGGTTGCGTTAAAAATGTTGGTACTTCACCGA 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 56 TCTCTCGATATCGACGG-AAATGGCGTCGGGTTGCGTTAAAAATGTTGGTACCTCGCCGA 114
Query 61 GTCACTCATGGACGAGCTCCAAAATGTCATTGACCCGTGAATCTCAACCGTTGGCTCCA- 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 115 GTCACTCATGGACGAGCTCCAAAATGTCATTGACCCGTGAATCTCAACCGTTGGCCCCAG 174
Query 120 CAGTTGGAAAACGAAGATCCTGTTGACAACTTTGAGTTTCTTCTCGAAGATCCCGTCACA 179
| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 175 C-GTTAGAAAACGAAGATCCTGTTGACGACTTTGAGTTTCTACTCGAAGATCCCGTCACA 233
Query 180 ATGCTATCCGCCGACGAGCTTTTCTCCGACGGAAAGCTAGTCCCGCTTAAGTTTTCCGCC 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 234 ATGCTATCCGCCGACGAGCTTTTCTCCGACGGAAAGCTTGTCCCGCTTAAGTTTTCTGGC 293
Query 240 GTGACTAATCCGGAAGAGAAGCCTATGACGTCGGTGGTTCATACGGCGGTGAAACCATGC 299
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 294 GTAACTTATCCGGAAGAGAAGCCTATAACGTCGGTGGTTCATACGGCGGTGAAACCATGC 353
Query 300 CGAAGATTGGAAATGGAGATCTCCGGCGTCGTCGATCCTTATCTCTTCTCTCCGAGAGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CGAAGATTGGAAATGGAGATCTCCGGCGTCGTCGATCCTTATCTCTTCTCTCCGAGAGCT 413
Query 360 CCTCGTTGCACCGTGAGATGGCGTGAGCTTTTAGGTCTAAAGAGACTCGCCAAAACACAA 419
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 414 CCTCGTTGCACCGTGAGATGGCGTGAGCTTTTAGGTCTTAAGAGACTCGCCAAAACGCAA 473
Query 420 GAAGAAGCGTCAGCGTCGTCCTCATCGCGTTTGTCTTCTTCTTCTCCAAACCCCAAAACG 479
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 474 CAAGAAGCGTCAGCGTCGTCCTCGTCGCGTTTGTCTTCTTCTTCTCCAAACCCCAAAACG 533
Query 480 GCATCGTTTAGGCATTTTCTCAACCGGAGTTCTAAATCCACCGCTCAACCACCGTCTCAC 539
||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 534 GCATCGTTTAGACATTTTCTCAACCGGAGTTCTAAATCTACCGCTCAACAACCGTCTCAT 593
Query 540 CCGCCGCCGGGAAAAGACTCAGACATCTTGGAATCGTCGTCAACGTCGATCTCCTCTTCA 599
||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct 594 CCGCCGCCGGGAAAAGACTCAGATATCTTGGAGTCATCGTCAACGTCTATCTCCTCTTCA 653
Query 600 CGtctctctctctcGTCGTCTTCTTCCTCCGGTCGCGAGCTAGACGACCTTCCAAGACTA 659
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 654 CGTCTCTCTCTTTCGTCGTCTTCTTCCTCCGGTCACGAGCTAGACGACCTTCCAAGACTA 713
Query 660 TCTTTAGATCTCGACAACAAACCCGGAACACCAAACCCGTTCGCTCGGTCACGTGCTCAC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 TCTTTAGATCTCGACAACAAACCCGGAACACCAAACCCGTTCGCTCGGTCACGTGCCCAC 773
Query 720 CACCACCACCATCT-GCGTAACCAGAACCAACAAAGAAAGCCACGACGTAACGCACCGGC 778
||||||||||| || ||||||||| ||||||| |||||||||||||||| || ||| ||
Sbjct 774 CACCACCACCA-CTTGCGTAACCAAAACCAACCAAGAAAGCCACGACGTCACACACAGGT 832
Query 779 TGATGAATTGACAGAGAGTAGTATTGAGACAAGGGCAATGACGGTGACGGCGGATAGTCC 838
|||||||| |||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 833 TGATGAATCAACAGAGAGTAGTATTGAGTCGAGAGTAATGACGGTGACGGCGGATAGTCC 892
Query 839 TAGACTCAATGCTTCGGGGAAGATCGTGTTTCATGGACTGGAGAGAAGCTCAAGCAGTCC 898
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 GAGACTCAATGCTTCGGGGAAGATCGTGTTTCATGGACTCGAGAGAAGCTCAAGCAGTCC 952
Query 899 CGGTAACTTCACCGGAGGACCAAGAATGAAGCTTCACCATGGAATGCCGAGATCTCACTC 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CGGTAACTTCACTGGAGGACCAAGAATGAAGCTTCACCATGGAATGCCGAGATCTCACTC 1012
Query 959 CGCTAATGTCAGAATCACTCCTGTTCTCAATGTCCCTGTCTCTTCTCTCCGTAGCGGACC 1018
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1013 AGCTAATGTCAGAATCACTCCTGTTCTCAATGTTCCTGTCTCTTCTCTCCGTAGCGGGCC 1072
Query 1019 CAAATCAGgtctcttcttcggccagcttttcgcttcttcgtcttcttcttcttcgtcgtc 1078
||||||||| ||||| || |||||||||||||||||||| | | |||| |||| |||||
Sbjct 1073 CAAATCAGGCCTCTTTTTTGGCCAGCTTTTCGCTTCTTC-T-T-CTTCAGCTTCATCGTC 1129
Query 1079 gtcattggcttcgtcgtctGGAAACAGAGCACAGTTGCAGAGCAATAACATCAAGAACCG 1138
| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 -T--T---C---GTCGTCTGGAAACAGAGCACAGTTGCAGAGCAATAACATCAAGAACCG 1180
Query 1139 TACCAATCGAAGCAGACTTGAACCGACAAGCGAACTCTAAGAACCGAACCGGATACTAAT 1198
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1181 TACCAATCGAAGCAGACTTGAACCGACAAGCGAACTCTAAGTACCGAACCGGATTCTAAT 1240
Query 1199 T 1199
|
Sbjct 1241 T 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5