BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929021
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12977.1 | Symbols: | NAC (No Apical Meristem) domain trans... 1238 0.0
> AT3G12977.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:4143726-4145967
FORWARD LENGTH=1053
Length=1053
Score = 1238 bits (670), Expect = 0.0
Identities = 797/859 (93%), Gaps = 5/859 (1%)
Strand=Plus/Plus
Query 1 ATCTTCAGATATTAATAGAAATGGAGGAAAAAGAAGAGAAGAAGGGCAGTATAAGTATGG 60
|||||||||||||||||||||||||||| | |||| |||| |||||||| ||||||||||
Sbjct 87 ATCTTCAGATATTAATAGAAATGGAGGAGACAGAAAAGAATAAGGGCAGCATAAGTATGG 146
Query 61 TTGAGGCTAACCTACCTCCTGGTTTTAGGTTCCATCCTAGAGACGACGAGCTCGTCTGCG 120
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 147 TTGAGGCTAATCTACCTCCTGGTTTTAGATTCCATCCTAGAGACGACGAGCTCGTCTGTG 206
Query 121 ACTACTTGATGAGAAGAACCGTTCGCAGCCTCTATCAACCTGTTGTCTTGATCGACGTCG 180
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 207 ACTACTTAATGAGAAGAACCGTTCGCAGCCTCTATCAACCAGTTGTCTTGATCGACGTCG 266
Query 181 ATCTCAACAAGTGCGAGCCTTGGGACATTCCTCAAATGGCGAGAGTGGGAGGGAAAGAAT 240
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 267 ATCTTAACAAATGCGAGCCTTGGGACATTCCTCAAACGGCGAGAGTGGGAGGGAAAGAAT 326
Query 241 GGTATTTTTACAGCCAAAAAGATAGGAAATACACAACAGGCCACAGAACAAACCGGGCTA 300
|||| ||||||||||||||||| | |||||| |||||||| ||||||||||||||||||
Sbjct 327 GGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTA 386
Query 301 CGGCCACCGGTTATTGGAAAGCCACCGGAAAAGATAGAGCAATCCAAAGAAATGGTAGTC 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 387 CGGCCACCGGTTATTGGAAAGCCACCGGGAAAGATAGAGCAATCCAAAGAAACGGTGGTC 446
Query 361 TTGTGGGTATGAGAAAGACACTTGTGTTTTACCGAGGTCGAGCCCCTAAAGGTCGTAAAA 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 447 TTGTGGGTATGAGAAAGACACTTGTGTTTTACCGAGGTCGATCCCCTAAAGGTCGTAAAA 506
Query 421 CCGATTGGGTCATGCATGAGTTTCGTCTCCAA-GAAACACTACTTCACCACACTTCTAAT 479
| |||||||||||||||||||||||||||||| |||| ||| ||||||||| | |||||
Sbjct 507 CTGATTGGGTCATGCATGAGTTTCGTCTCCAAGGAAA-ACTTCTTCACCACTCCCCTAAT 565
Query 480 TCTCTCAAGGAAGAGTGGGTATTATGTAGAGTTTTCCACAAGAACAGCAACGGAGCTGAT 539
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 566 TCTCTCGAGGAAGAGTGGGTATTGTGTAGAGTTTTCCACAAGAACAGCAACGGAGCTGAT 625
Query 540 AGAGTCGACAACACAAAAAGCTGCTCTAATGAAACAGCTCCTGCATTCATGGACTCTTAC 599
| || ||||| ||||| ||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 626 ATAGACGACATCACAAGGAGCTGCTCTGATGCAACAGCTTCTGCATTCATGGACTCTTAC 685
Query 600 ATTAACTTCG---ATCATCACATCATCAATCAGCATGTACCCTGCTTCTCCAATAATTTG 656
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 ATCAACTTCGACCATCATCACATCATCAATCAGCATGTACCCTGCTTCTCCAATAATTTG 745
Query 657 TCAGAGAACCAAACTAACGAATCCGGTTTAGTCTCCAAAAACTCCAGCCCGTTGTTTAAT 716
||| | |||||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 746 TCACATAACCAAACCAACCAATCCGGTTTAATCTCCAAGAACTCCAGCCCATTGTTTAAT 805
Query 717 GCTTCCCCTGATCAAATGATTATCCGAACTTTGCTAAGTCAACTCACAAAAAATGTCGAA 776
||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 806 GCTTCCCCTGATCAAATGATTCTCAGAACTTTGCTAAGTCAACTCACAAAAAAAGTCGAA 865
Query 777 AAATCAGAGAGTTATGGAGAAGGAAGCTCAGAGAGCCAATTGACCAACATTGGCATCCCA 836
||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 866 GAATCACAGAGTCGTGGAGACGGAAGCTCAGAGAGCCAATTGACCGACATTGGCATCCCA 925
Query 837 AGCCCTACATGGAATTACT 855
|||| | ||||||||||||
Sbjct 926 AGCCATGCATGGAATTACT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5