BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929024

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21230.3 | Symbols:  | Basic-leucine zipper (bZIP) transcrip...   425    1e-118


> AT2G21230.3 | Symbols:  | Basic-leucine zipper (bZIP) transcription 
factor family protein | chr2:9093624-9096347 REVERSE 
LENGTH=2014
Length=2014

 Score =  425 bits (230),  Expect = 1e-118
 Identities = 310/346 (90%), Gaps = 16/346 (5%)
 Strand=Plus/Plus

Query  11   GTCTTCTTCGATCCCTAAACAGAATCTTCACTTGAATCCTTCTCATATCAGCTCTCACCA  70
            ||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||
Sbjct  209  GTCTTCTTCGATCCCTAAACACAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCA  268

Query  71   TCACTTCCGTCAGCCTTTCACCGG-G--GCTCCGCCGCCGATTCCTCCCATTTCTCCTTA  127
            |||||||||||| ||||||||||| |   |||| ||||||||||| ||||||||||||||
Sbjct  269  TCACTTCCGTCACCCTTTCACCGGAGCTCCTCCACCGCCGATTCCACCCATTTCTCCTTA  328

Query  128  CTCTCAGATCCCGACGACTTTACAACCTAGGCATTCTCGGTCTATGTCGCAACCATCGTC  187
            ||||||||||||| |||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct  329  CTCTCAGATCCCGGCGACTTTACAACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTC  388

Query  188  TTTCTTCTCCTTTGATTCATTGCCGCCGTCAAATCC----GC-C-G--G-TTTCGGTGTC  238
            ||||||||||||||||||||||||||||| ||||||    || | |  | ||||||||||
Sbjct  389  TTTCTTCTCCTTTGATTCATTGCCGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTC  448

Query  239  GGTGGAGGAAAAAACCGGCGCCGGATTTAG-CCTCTC-TCTGCCTCCGTCACCGTTTACG  296
            ||||||||| |||||||| ||||||||||| ||| || | ||||||||||||||||||||
Sbjct  449  GGTGGAGGAGAAAACCGGTGCCGGATTTAGTCCT-TCGT-TGCCTCCGTCACCGTTTACG  506

Query  297  ATGTGTCATTCTTCTAGCTCTCGGAACGTCGAAGATGGGGAGAATC  342
            ||||||||||||||||||||| |||||| || |||||| |||||||
Sbjct  507  ATGTGTCATTCTTCTAGCTCTAGGAACGCCGGAGATGGAGAGAATC  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17241837907


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5