BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929032
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13624.1 | Symbols: | pseudogene, hypothetical protein | ch... 416 3e-115
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 71.3 3e-11
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 65.8 1e-09
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 58.4 2e-07
> AT3G13624.1 | Symbols: | pseudogene, hypothetical protein |
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792
Score = 416 bits (225), Expect = 3e-115
Identities = 466/576 (81%), Gaps = 42/576 (7%)
Strand=Plus/Plus
Query 567 AGGGTTCCATTGACATCTTTGAATGCAGTGCGATCAACTTGCAAAACGTGGAACGCTTTA 626
|||||||||||||||||| ||| ||||||||||| | ||||||||||||||| ||||
Sbjct 52 AGGGTTCCATTGACATCTCTGAGCGCAGTGCGATCCATTTGCAAAACGTGGAATACTTTG 111
Query 627 TCCAA-AACTCTG-GTT-TTTGGTAAAGCAGCAGCAGTAAAGAAGCAGCTTTTTATGGGA 683
||||| || || | ||| ||| ||||||| | ||||||||||| ||| |||| |||||
Sbjct 112 TCCAAGAA-TC-GTGTTCTTT-GTAAAGC-G--GCAGTAAAGAAACAG--TTTT-TGGGA 162
Query 684 TTCATTATGATGGATTATAGGGTTTGCTCGATTAAATTCCATCTCCAAAACGA-G-GGG- 740
||||||||||||||||||||||||||||| || ||||||||||||| |||||| | |||
Sbjct 163 TTCATTATGATGGATTATAGGGTTTGCTCCATGAAATTCCATCTCCGAAACGACGAGGGA 222
Query 741 GGAGACTTGGTTG-T--TCCATGTATAAAGCAAGTAGGTACACTTAACCAAGTTGAGATA 797
||||||||||||| | || || ||||||||||||||||| |||| | ||| | ||||||
Sbjct 223 GGAGACTTGGTTGATGATCTATCTATAAAGCAAGTAGGTATACTTGATCAAATCGAGATA 282
Query 798 TCTAAAGTCCTT-CAATGTGACGGCTTATTGCTATGCGTCACTAAGGATAACTCAAGTCT 856
||| ||||| || || |||||||||||| | || | |||||||||||| |||||||||||
Sbjct 283 TCTGAAGTC-TTACATTGTGACGGCTTACTCCTTTTCGTCACTAAGGACAACTCAAGTCT 341
Query 857 TGTGGTATGGAATCCCTATTTGGGGCAAACTAGGTGGATCCAACCCCGAAACAATTTCGA 916
|||||||||||||||||||||||||||||| |||| ||| |||||| | ||||||||| |
Sbjct 342 TGTGGTATGGAATCCCTATTTGGGGCAAACGAGGTTGATACAACCCAGTAACAATTTCCA 401
Query 917 AGAGTT-AGACAAG-TATGCTCTTGGATACGACAAGAACCGTAATCACAAAATCTTGAGG 974
||| |||| | |||||| | ||||| ||||| |||||||| | |||||||||||||
Sbjct 402 CT-GTTCAGACC-GCTATGCTATCGGATATGACAATAACCGTAACCTCAAAATCTTGAGG 459
Query 975 GTTTTCTGTGTTTCA-GAAAGCGGACTCGGAGTTTTTGGTTATGAAATCTACAGTTTGAG 1033
|||| ||| || | | |||| || | |||||||||||||||| ||| |
Sbjct 460 AATTTCAGTGATT-ATGGAAGC----TC----T----GGTTATGAAATCTACAATTTTCG 506
Query 1034 CTCTAATTCATGGAAG-GTTTTTGATGC-CACTCCCGACTGGGATATACACTTTTTTGAA 1091
||||||||||| ||| ||||| ||| | |||| |||||||| ||||| | | | ||
Sbjct 507 TTCTAATTCATGAAAGAGTTTT-GAT-CTCACTTCCGACTGGTATATAGGGTCTAATAAA 564
Query 1092 CCCGTCGTGTCTTTGAAAGGAAATACTTATTTCTTG 1127
| | ||||||||| || |||||||| || |||||
Sbjct 565 CGTGGCGTGTCTTTCAAGGGAAATACATACATCTTG 600
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 71.3 bits (38), Expect = 3e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1353 GGGAGTTTCTTCATTGACGAGGAGAAGAAAATTGCTGTGGTTTT 1396
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct 996 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTT 1039
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 65.8 bits (35), Expect = 1e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1353 GGGAGTTTCTTCATTGACGAGGAGAAGAAAATTGCTGTGGTTTT 1396
|||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 796 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTT 839
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1352 TGGGAGTTTCTTCATTGACGAGGAGAAGAAA 1382
|||||||||||||||||||||||||||||||
Sbjct 537 TGGGAGTTTCTTCATTGACGAGGAGAAGAAA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5