BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929041
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13110.1 | Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M, S... 1751 0.0
> AT3G13110.1 | Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M,
SERAT2;2 | serine acetyltransferase 2;2 | chr3:4214617-4216302
REVERSE LENGTH=1686
Length=1686
Score = 1751 bits (948), Expect = 0.0
Identities = 1135/1223 (93%), Gaps = 22/1223 (2%)
Strand=Plus/Plus
Query 6 CGATAAAAATAAGCAATGTTCCCCGTCACAAGTCGCCGCCATTTCTCAATGTCCCTATAT 65
||| ||||| || |||||| || ||||||||||||||||| ||| ||||||||||||||
Sbjct 174 CGAGAAAAAAAAAAAATGTTGCCGGTCACAAGTCGCCGCCACTTCACAATGTCCCTATAT 233
Query 66 ATGCTCCGTTCATCTTCTCCACACATCAATCATCActctttccttcttccttcttctgtt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 234 ATGCTCCGTTCATCTTCTCCACACATCAATCATCACTCTTTCCTTCTTCCTTCTTTTG-T 292
Query 126 tcctcctccactttc--tctcc-tA--TCAAAGAC-CAACCTT-T-AT-CTCCTCCTCCT 176
| ||||||| ||| | || || | | | | |||| | | |||||||||||
Sbjct 293 T--TCCTCCAAATTCAAACACCATACTTTATCTCCTCCTCCTTCTCCTCCTCCTCCTCCT 350
Query 177 CCTATGGCTGCGTGCATCGACACCTGCCGTACTGGTAAACCCCAGATTTCTCCTCGCGAT 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 351 CCTATGGCTGCGTGCATCGACACCTGCCGCACTGGTAAACCCCAGATTTCTCCTCGCGAT 410
Query 237 TCTTCAAAAAACCACGATGATGAATCTGGCTTTCGTTACATG-ACTTACTTCCGTTACCC 295
||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||||| ||
Sbjct 411 TCTTCTAAACACCACGACGATGAATCTGGCTTTCGTTACATGAAC-TACTTCCGTTATCC 469
Query 296 TGATCGAGCTTCCTTCAACGGAACCCAGACGAAAACCCTCCATACTCGTCCTTTGGTTGA 355
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 470 TGATCGATCTTCCTTCAATGGAACCCAGACCAAAACCCTCCATACTCGTCCTTTGCTTGA 529
Query 356 AGATCTCGATCGCGACGCTGAAATCGATGATGTTTGGGCCAAAATCCGAGAAGAAGCTAA 415
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 530 AGATCTCGATCGCGACGCTGAAGTCGATGATGTTTGGGCCAAAATCCGAGAAGAGGCTAA 589
Query 416 ATCTGACATCGCGAAAGAACCTATTGTTTCCGGC-TATTATCACGCTTCGATTGTGTCCC 474
|||||| ||||| |||||||||||||||||| || |||||||||||||||||||| || |
Sbjct 590 ATCTGATATCGCCAAAGAACCTATTGTTTCC-GCTTATTATCACGCTTCGATTGTTTCTC 648
Query 475 AGAGATCGTTGGAAGCTGCGTTGGCCAATACTTTATCTGTTAAACTCAGCAATTTGAATC 534
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 AGCGTTCGTTGGAAGCTGCGTTGGCGAATACTTTATCTGTTAAACTCAGCAATTTGAATC 708
Query 535 TTCCAAGCAACACGCTTTTCGATTTGTTCTCCGGTGTTCTTCAAGAGAA-CCCAGAAATT 593
||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||
Sbjct 709 TTCCAAGCAACACGCTTTTCGATTTGTTCTCTGGTGTTCTTCAAG-GAAACCCAGATATT 767
Query 594 GTTGAATCTGTGAAGCAAGATCTGTTAGCTGTTAAGGAAAGAGATCCAGCTTGTATAAGC 653
||||||||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 768 GTTGAATCTGTCAAGCTAGATCTTTTAGCTGTTAAGGAGAGAGATCCTGCTTGTATAAGC 827
Query 654 TACGTTCATTGTTTCCTTCACTTTAAAGGCTTCCTCGCTTGTCAAGCGCATCGTATTGCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TACGTTCATTGTTTCCTTCACTTTAAAGGCTTCCTCGCTTGTCAAGCGCATCGTATTGCT 887
Query 714 CATGAGCTTTGGACGCAGGACCGAAAAATCCTAGCTTTGTTGATTCAGAACAGAGTATCT 773
|||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 888 CATGAGCTTTGGACTCAGGACAGAAAAATCCTAGCTTTGTTGATCCAGAACAGAGTCTCT 947
Query 774 GAAGCCTTCGCTGTTGATTTCCACCCTGGAGCTAAAATCGGAACCGGGATTTTGCTAGAC 833
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 GAAGCCTTCGCTGTTGATTTCCACCCTGGAGCTAAAATCGGTACCGGGATTTTGCTAGAC 1007
Query 834 CACGCTACGGCTATCGTGATCGGCGAGACGGCGGTTGTGGGGAACAATGTTTCGATTCTC 893
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1008 CATGCTACGGCTATTGTGATCGGTGAGACGGCGGTTGTGGGGAACAATGTTTCGATTCTC 1067
Query 894 CATAACGTTACGCTTGGAGGGACAGGGAAACAGTGTGGAGATAGGCATCCGAAGATTGGC 953
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1068 CATAACGTTACGCTTGGAGGAACGGGGAAACAGTGTGGAGATAGGCACCCGAAGATTGGC 1127
Query 954 GATGGTGTTTTGATTGGTGCTGGGACTTGTATTTTGGGGAATATTACGATTGGTGAAGGA 1013
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 GATGGGGTTTTGATTGGAGCTGGGACTTGTATTTTGGGGAATATCACGATTGGTGAAGGA 1187
Query 1014 GCTAAGATTGGTGCTGGGTCGGTGGTGTTGAAGGATGTGCCGCCGCGTACGACGGCTGTG 1073
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1188 GCTAAGATTGGTGCGGGGTCGGTGGTGTTGAAAGACGTGCCGCCGCGTACGACGGCTGTT 1247
Query 1074 GGAAATCCGGCGAGGTTGCTTGGTGGTAAAGATAATCCGAAAACGCACGACAAGATTCCT 1133
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1248 GGAAATCCGGCGAGGTTGCTTGGTGGTAAAGATAATCCGAAAACGCATGACAAGATTCCT 1307
Query 1134 GGTTTGACTATGGACCAGACATCGCATATATCCGAGTGGTCGGATTATGTAATTTGAAAA 1193
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGTTTGACTATGGACCAGACGTCGCATATATCCGAGTGGTCGGATTATGTAATTTGAAAA 1367
Query 1194 AGTCTTTTTGTGTTTTG-TTGTT 1215
||||||| || ||||| |||||
Sbjct 1368 AGTCTTT--GT-TTTTGGTTGTT 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5