BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929045
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2196 0.0
> AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4227740-4229651 REVERSE LENGTH=1912
Length=1912
Score = 2196 bits (1189), Expect = 0.0
Identities = 1484/1619 (92%), Gaps = 49/1619 (3%)
Strand=Plus/Plus
Query 2 TTTCACCACCTGCACGAAGCTATGAGCAAGGTGGGCTCGTCTCTGTTCAGTCGCCTCCAT 61
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 1 TTTCACCACCTGCACGAAGCTATGAGCAAGGTAGGCTCGTCGCTGTACAGTCGCCTCCAT 60
Query 62 GGAATCTTCAAAGAATCTTCAATCGCCACCGCTAAGTCCGCAAAACCCAGAAGCCAAACC 121
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAATCTTCAAAGAATCTTCAATCGCCACTGCTAAGTCCGCAAAACCCAGAAGCCAAACC 120
Query 122 AAATCCAACAAATTTCCTAGTAAATTGAAGGCATCCACCGCTTCTTTCGCCTCTGTAGGA 181
||||||| |||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 121 AAATCCACCAAATTCCCTAGTAAATTGAAGGCATCCA------C---CGCCTCTGTAGGA 171
Query 182 GACGGAGG-CAATTTGTCGAATGACGCCAAGGAATCGAAAAATTCGAAATTGACGAAGAA 240
|||||||| ||| | |||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 172 GACGGAGGTCAA-TCGTCGAATGACGCCAAGGATTCTAAAAATTCGAAATTGACGCAGAA 230
Query 241 AGTAGAGAAGTTCAAGAGATCCTGTGAGTCGGAGGGTTTCCGGCAAGTCCATGGACTCTA 300
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 231 AGTAGAGAAGTTCAAGAGATCCTGCGAGTCTGAGAGTTTCCGGCAAGTCCATGGACTCTA 290
Query 301 CAGTGCGTTTATCCGGCGTCTCAGGGAAGCAAAGAAGTTCTCAACGATCCATGAAGTTCT 360
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 291 CAGTGCGTTTATCCGCCGTCTCAGGGAAGCAAAGAAGTTCTCAACGATCGACGAAGTTCT 350
Query 361 TCAATACCAGAAGAAGTTCGATGACATAAAGTCGGAGGATTTCGTTATCCGTATGATGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 TCAATACCAGAAGAAGTTCGATGACATAAAGTCGGAGGATTTCGTTATCCGTATAATGCT 410
Query 421 TCTTTATGGATACTCAGGAATGGCTGAGCATGCGCATAAGTTGTTCGATGAAATGCCTGA 480
|||||||||||||||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 411 TCTTTATGGATACTCAGGAATGGCGGAACATGCGCACAAACTGTTCGATGAAATGCCTGA 470
Query 481 GCTAAACTGTGAACGAACTGTCAAGTCGTTCAATGCGCTTTTATCGGCTTATGTTAATTC 540
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 471 GCTAAACTGTGAAAGAACTGTGAAGTCGTTCAATGCGCTTCTATCGGCTTATGTTAATTC 530
Query 541 AAGGAAGCTTGATGAGGCCATGAAAG-CCTTCAAGGAGTTGCCAGAGAAGCTAGGTATCA 599
|| ||||||||| ||||| ||| ||| ||||||||||||| ||||||||||||||||| |
Sbjct 531 AAAGAAGCTTGACGAGGCTATG-AAGACCTTCAAGGAGTTACCAGAGAAGCTAGGTATTA 589
Query 600 CTCCTGATCTGGTTACTTATAATACCATGATCAAGGCACTTTGCCGTAAAGGCTCTATGG 659
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CTCCTGATTTGGTTACTTATAATACCATGATCAAGGCACTTTGCCGTAAAGGCTCTATGG 649
Query 660 ATGATATATTATCTATCTTTGAGGAACTGGAGAAGAACGGGTTTGAGCCTGATTTGATCT 719
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 650 ATGATATATTATCTATCTTTGAGGAACTGGAGAAGAACGGGTTCGAGCCTGACTTGATCT 709
Query 720 CTTTCAACACTCTGTTAGAAGAGTTTTATAGGAGGGAATTGTTTGTTGAAGGAGATAGGA 779
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 710 CTTTCAACACTCTGTTAGAAGAGTTTTATAGGAGGGAGTTGTTTGTTGAAGGTGATAGGA 769
Query 780 TTTGGGATTTGATGAAATCCAAGAATCTTGCTCCCAACATTAGGAGTTATAACTCTAGAG 839
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 770 TTTGGGATTTGATGAAATCCAAGAATCTTTCTCCTAACATTAGGAGTTATAACTCGAGAG 829
Query 840 TGAGAGGTCTGACCCGGAACAAGAAGTTCACTGATGCAATTGACTTGATCAATGTTATGA 899
|||||||||| || |||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 830 TGAGAGGTCTTACTCGGAACAAGAAGTTCACTGATGCACTTAACTTGATTGATGTTATGA 889
Query 900 AAACTGAAGGGATCTCCCCAGATGTTCATACATACAATGCTTTCATCACGGCTTACCGCG 959
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 890 AAACTGAAGGGATTTCCCCAGATGTTCATACATACAATGCTTTAATCACGGCTTACCGTG 949
Query 960 GTGATAACAACCTTGAGGAGGTTATGAAATGGTACAATGAGATGAAGGAGAAGGGTCTGA 1019
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 950 TTGATAACAACCTCGAGGAGGTTATGAAATGTTACAATGAGATGAAGGAGAAGGGTCTGA 1009
Query 1020 CTCCTGATACAGTGACTTACTGTTTGTTAATCCCTCTTCTCTGCAAGAAAGGTGATCTTG 1079
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTCCTGATACAGTGACTTACTGTATGTTAATCCCTCTTCTCTGCAAGAAAGGTGATCTTG 1069
Query 1080 ATAGAGCTGTTGAGATCTCCGAAGAAGCCATCAAACACAAGCTCCTGTCTCGCCCGAACA 1139
||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 ATAGAGCGGTTGAGGTATCCGAAGAGGCCATCAAACACAAGCTCCTGTCTCGCCCGAACA 1129
Query 1140 TGTACAAACCCGTGGTTGAGCGTTTGATGGGTGCAGGCAAGATTGATGAAGCAACACAGC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TGTACAAACCCGTGGTTGAGCGTTTGATGGGTGCAGGCAAGATTGATGAAGCAACACAGC 1189
Query 1200 TAGTGAAGAATGGCAAGCTACAGAGTTACTTTCGGTACCTACCAGACTTGTCCGCTGGTA 1259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1190 TAGTGAAGAATGGCAAGCTACAGAGTTACTTTCGGTACCTGCCAGACTTGTCCGCTGGTA 1249
Query 1260 AGAAGAAGACCACTTCCAGTCCGGTCTCTTCAAGTTCAGA-GATCACTTCCAGTCAGGTC 1318
|||| ||||||||||||||||| |||||||||||| | || || |||||||| || ||||
Sbjct 1250 AGAAAAAGACCACTTCCAGTCCAGTCTCTTCAAGTGC-GAAGACCACTTCCACTCCGGTC 1308
Query 1319 TCTTCAGGTTCGGATACCTCTTCATTTCTGCTCTCTTTAAGTCTGGCGTCGGACTCTTCC 1378
|||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1309 TCTTCAAGTCCGGATACCTCTTCCTTTCTGCTCTCTTTAAGTCTGGCGGCGGACTCTTCC 1368
Query 1379 AGCTC-G-----GACTCTTCCAGCTCG-GACTCTTTCAGCTCGGTCTCTTCG-GATC-AG 1429
||||| | |||||||| || || ||||||| |||||| ||||||||| | || ||
Sbjct 1369 AGCTCCGACTCCGACTCTTCGAG-TCCAGACTCTTCCAGCTCCGTCTCTTCGAG-TCCAG 1426
Query 1430 GACTCTTCCAGC-CCGGTCTCTTCGAATTCGGACTCTTCCAGCCCGGTCTCTTCGAGTCT 1488
||||||||||| ||| ||||||||| | | ||||||| |||| || ||||||||||||
Sbjct 1427 -ACTCTTCCAGCTCCG-TCTCTTCGAGTCCAGACTCTTACAGCTCGTTCTCTTCGAGTCC 1484
Query 1489 -GTACTCTTCCAGC-C---C-----G-GTCT---CT-T-CAAGCCCGGT---CTCTTCGA 1529
| ||||||||||| | | | |||| || | |||| | || |||||| |
Sbjct 1485 AG-ACTCTTCCAGCTCTGTCTCTTCGAGTCTGTTCTCTTCAAGTCGGGAGAACTCTTCAA 1543
Query 1530 GTTCGGACTATTCCAGCTCGGTCTCTTCGAGATCGGACTATTCCAGCTCGGTCTCTTCG 1588
|| |||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 1544 GTCCGGACTATTCCAACTCGGTCTCTTCGAGTTTGGACTATTCCGGCTCGGTCTCTTCG 1602
Score = 141 bits (76), Expect = 2e-32
Identities = 220/283 (78%), Gaps = 36/283 (13%)
Strand=Plus/Plus
Query 1370 GACTCTTCCAGCTCGGACTCTTCCAGCT-CGGACTCTTTCAGCTCGGTCTCTTCGGA-T- 1426
|||||||||||||| | |||||| || | | ||||||| ||||||| ||||||| || |
Sbjct 1426 GACTCTTCCAGCTCCGTCTCTTCGAG-TCCAGACTCTTACAGCTCGTTCTCTTC-GAGTC 1483
Query 1427 CAGGACTCTTCCAGCCCGGTCTCTTCGAATTC-GGACTCTTCCAG-CCCG-G-TCTCTTC 1482
|| |||||||||||| | ||||||||| | || | |||||| || | | | ||||||
Sbjct 1484 CA-GACTCTTCCAGCTCTGTCTCTTCG-AGTCTGTTCTCTTCAAGTCGGGAGAACTCTTC 1541
Query 1483 GAGTCTGTACTCTTCCAGCCCGGTCTCTTC--------A--A-----GCCCGGTCTCTTC 1527
|||| | ||| ||||| | |||||||||| | | || ||||||||||
Sbjct 1542 AAGTCCGGACTATTCCAACTCGGTCTCTTCGAGTTTGGACTATTCCGGCTCGGTCTCTTC 1601
Query 1528 GAGTTCGGACTATTCCAGCTCGGTCTCTTC-GAGAT-CGGACTATTCCAGCTCGGTCTCT 1585
|||||||||||||||||||||||||| ||| ||| | || ||| ||||||||| | ||
Sbjct 1602 GAGTTCGGACTATTCCAGCTCGGTCT-TTCCGAG-TGCGAACTCTTCCAGCTC--T-TC- 1655
Query 1586 TCGTCTGGCTTGTTTGACGATTAAGAGTGCTTGATCAGTGTTT 1628
| ||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1656 -C-TCTGGGTTGTTGGACGATTAAGAGTGCTTGATCTGTGTTT 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5