BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929052

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein sorting-assoc...   117    6e-26


> AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein sorting-associated 
protein VPS28 family protein | chr4:2563075-2564740 
FORWARD LENGTH=1114
Length=1114

 Score =  117 bits (63),  Expect = 6e-26
 Identities = 84/94 (89%), Gaps = 2/94 (2%)
 Strand=Plus/Plus

Query  20   GATGGAGGTCAAGTTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTCGTAGA  79
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  329  GATGGAGGTCAAATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGA  388

Query  80   GCTATACGCTAA-CATCAAAGCTACTGAGAAGCT  112
            ||| |  || || ||||||||| || ||||||||
Sbjct  389  GCTTTTTGC-AATCATCAAAGCCACAGAGAAGCT  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5