BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929064 Length=689 Score E Sequences producing significant alignments: (Bits) Value AT3G13230.1 | Symbols: | RNA-binding KH domain-containing prot... 1131 0.0 > AT3G13230.1 | Symbols: | RNA-binding KH domain-containing protein | chr3:4269978-4271204 FORWARD LENGTH=891 Length=891 Score = 1131 bits (612), Expect = 0.0 Identities = 663/688 (96%), Gaps = 2/688 (0%) Strand=Plus/Plus Query 2 TAATTATCACAATTGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACTGCAACAG 61 ||||| | || || |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 92 TAATT-T-ACCATAGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACAGCAACAG 149 Query 62 GAGGAACTGTGCCATTGCCGCCTAAACCAACATTCAAGCCTTTGAAAGCTCATGAAATGT 121 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 150 AAGGAACTGTGCCATTGCCGCCTAAACCAACCTTCAAGCCTTTGAAAGCTCATGAAATGT 209 Query 122 CTGATGGTAAAGTTCAATTCAGGAAAATATCCGTACCACCAAACCGATACTCGCCTCTCA 181 ||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||| Sbjct 210 CTGATGGTAAAGTCCAGTTCAGGAAAATAGCTGTACCACCAAACCGATACTCGCCTCTCA 269 Query 182 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATTAGGA 241 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 270 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATAAGGA 329 Query 242 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGATATCAGTA 301 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 330 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGACATCAGTA 389 Query 302 ATCTCCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTGGGTTTTGATATCCCTGATG 361 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 390 ATCTTCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATG 449 Query 362 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 509 Query 422 AGACTCTTAAAGGTGAGCATTTGTCTCGAGCTATCGGGAGATTGTCTGGTAAAGGAGGGA 481 |||||||||||||||||||||||||| |||| || || || ||||||||||||||||||| Sbjct 510 AGACTCTTAAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGA 569 Query 482 AGACAAAGTTTGCTATTGAGAACTCCACCAAGACGAGGATTGTGATTGCAGACACTAGGA 541 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 570 AGACAAAGTTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGA 629 Query 542 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGGGTTCACTTTGCAGTCTTA 601 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 630 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAGTTCACTTTGCAGTCTTA 689 Query 602 TTATGGGATCTCCCGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 661 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 690 TTATGGGATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 749 Query 662 ACGAATAGTTTTGAATGGTGATATTTTG 689 |||||||||||||||||| || |||||| Sbjct 750 ACGAATAGTTTTGAATGGCGAAATTTTG 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33355473608 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5