BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929064
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13230.1 | Symbols: | RNA-binding KH domain-containing prot... 1131 0.0
> AT3G13230.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:4269978-4271204 FORWARD LENGTH=891
Length=891
Score = 1131 bits (612), Expect = 0.0
Identities = 663/688 (96%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 2 TAATTATCACAATTGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACTGCAACAG 61
||||| | || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 92 TAATT-T-ACCATAGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACAGCAACAG 149
Query 62 GAGGAACTGTGCCATTGCCGCCTAAACCAACATTCAAGCCTTTGAAAGCTCATGAAATGT 121
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 150 AAGGAACTGTGCCATTGCCGCCTAAACCAACCTTCAAGCCTTTGAAAGCTCATGAAATGT 209
Query 122 CTGATGGTAAAGTTCAATTCAGGAAAATATCCGTACCACCAAACCGATACTCGCCTCTCA 181
||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 210 CTGATGGTAAAGTCCAGTTCAGGAAAATAGCTGTACCACCAAACCGATACTCGCCTCTCA 269
Query 182 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATTAGGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 270 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATAAGGA 329
Query 242 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGATATCAGTA 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 330 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGACATCAGTA 389
Query 302 ATCTCCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTGGGTTTTGATATCCCTGATG 361
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 390 ATCTTCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATG 449
Query 362 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 509
Query 422 AGACTCTTAAAGGTGAGCATTTGTCTCGAGCTATCGGGAGATTGTCTGGTAAAGGAGGGA 481
|||||||||||||||||||||||||| |||| || || || |||||||||||||||||||
Sbjct 510 AGACTCTTAAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGA 569
Query 482 AGACAAAGTTTGCTATTGAGAACTCCACCAAGACGAGGATTGTGATTGCAGACACTAGGA 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 570 AGACAAAGTTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGA 629
Query 542 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGGGTTCACTTTGCAGTCTTA 601
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 630 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAGTTCACTTTGCAGTCTTA 689
Query 602 TTATGGGATCTCCCGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 661
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TTATGGGATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 749
Query 662 ACGAATAGTTTTGAATGGTGATATTTTG 689
|||||||||||||||||| || ||||||
Sbjct 750 ACGAATAGTTTTGAATGGCGAAATTTTG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5