BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929066
Length=253
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13275.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 346 6e-95
> AT3G13275.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 29 Blast hits to 29
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:4289194-4289842 REVERSE LENGTH=649
Length=649
Score = 346 bits (187), Expect = 6e-95
Identities = 216/230 (94%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 1 AGAAACAAAGGGGGAAGAAGATGTGTTGTGGACGGATTTGCATGCTGTGCACGTGTTTGC 60
|||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 AGAATCAGAGGAAGAAGAAGATGTGTTGTGGACGGATTTGCATGCTGTGCACGTGTTTGC 248
Query 61 TCCTGGTGGTGATCGCGATTGGGTTTCTATTCGGATTCGGTGTCTTCAAGGATGGATTTC 120
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 249 TTCTTGTGGTGATCGCGATTGGGTTTCTATTTGGATTCGGTGTCTTCAAGGATGGATTTC 308
Query 121 ACAAGATCCAAGAATCAGTTCATCTCGAATGCGATCCCAGATTTAGTTGCGGCGGTGGCC 180
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 309 ACAAGATCCATGAATCAATTCATCTCGAATGCGATCCCAGATTTGGTTGCGGCGGTGGCC 368
Query 181 TTGGACGTCGCGGTTACGGTTTCCCAGCTCCCGGC-GGTGGTATTAATTA 229
|||||||||||||||| |||||||||||||| ||| |||||| |||||||
Sbjct 369 TTGGACGTCGCGGTTATGGTTTCCCAGCTCC-GGCCGGTGGTTTTAATTA 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11511314521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5