BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929072
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2290 0.0
AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1363 0.0
> AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:4331756-4335073 FORWARD LENGTH=2055
Length=2055
Score = 2290 bits (1240), Expect = 0.0
Identities = 1336/1384 (97%), Gaps = 0/1384 (0%)
Strand=Plus/Plus
Query 1 TTTATTTATCTACCAAAAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAG 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 222 TTTATTTATCTACCAAAAGAATGTCTAATTATCGAGGAGATGATGCTGAGTACATGGAAG 281
Query 61 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATG 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 282 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGAGGAGTTTCGTGGTGATG 341
Query 121 ATCTTGGTGCTTCTGATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTG 180
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 342 ATCTTGGTGCTTCAGATTCTGACGTTGAAGAATTTGACTATTCGAACAATAAAGTAGCTG 401
Query 181 ATACCTCGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ATACCACGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 461
Query 241 TTAGTATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTAATATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 521
Query 301 ATGTCCCTAATTCTGGGGAATCCTCAGAAAAGGTTTGCAAGGTCACACAGAAAGGGGGAC 360
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 522 ATGTCCCTAATTCTGGAGAATCATCAGAAAAGGTTTGCAAGGTCACACAGAAAGGAGGAC 581
Query 361 TATTTTATGATTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 641
Query 421 TGAGGAATTTGGTGTGGGCAACTTCTAAGCATGACGTGTATCTTATGTCAAACTTCCTGG 480
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 642 TGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCAAATTTTCTGG 701
Query 481 TTACACATTATTCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATG 540
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 702 TTACACATTATTCTTCTCTAACGTCTGGAAAGCATGAAGTTCTCAATGTCCGTGGTCATG 761
Query 541 TTGCACCATCCGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAAACTCAAGTAA 600
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 762 TTGCGCCATCTGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAGACTCAAGTAA 821
Query 601 GTACACTTGCAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 660
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 822 GTACACTTGCAGTAAAAGATGACTTTCTGGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 881
Query 661 GCAAGCATCTTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATG 720
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 882 GCAAGCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATGATAATG 941
Query 721 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 942 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCGT 1001
Query 781 CGAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 1061
Query 841 TCCGTTTTCCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTA 900
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1062 TCCGTTTTCCTTGGCCAGTGAATCACGCATCTTTGAGTCCTGATGGTAAATTACTGGCTA 1121
Query 901 TTGTTGGAGACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAA 960
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1122 TTGTTGGAGACAACCCGGAGGGCCTTATTGTAGACCCCAACACAGGAAAGACGTTGGAAA 1181
Query 961 CTCTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CACTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1241
Query 1021 TCTCAACAGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGT 1080
|||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1242 TCTCTACAGGAAACCAAGATAAGACTTGTCGTGTATGGGACATCCGTAACCTATCTCAGT 1301
Query 1081 CCGTTGCTGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1140
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1302 CTGTTACTGTCTTGAAGGGTAACCTGGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1361
Query 1141 GAAAATACATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1200
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1362 GAAAATACATGGCCATGGCTGAACCGGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1421
Query 1201 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATCTTTCAGCC 1260
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1422 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAAATCTCTGGAATATCTTTCAGCC 1481
Query 1261 CTGACACAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1320
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CTGACACAGAGGCGCTATTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1541
Query 1321 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCAAGAAGAGAAGTAT 1380
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1542 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCTAGAAGAGAAGTAT 1601
Query 1381 ACAC 1384
||||
Sbjct 1602 ACAC 1605
> AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:20804592-20807940 REVERSE LENGTH=1960
Length=1960
Score = 1363 bits (738), Expect = 0.0
Identities = 1148/1346 (85%), Gaps = 28/1346 (2%)
Strand=Plus/Plus
Query 17 AAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAGACGTAGATGATGAGAT 76
||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 223 AAGAATGTCTAATTATCAAGGGGATGATGCTGAGTACATGGAAGATGTGGATGATGAAAT 282
Query 77 GGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATGATCTTGG-TGCTTCTG 135
| || ||| |||||| | ||||| || |||||||| |||||| ||| ||| ||||
Sbjct 283 -G--GA---TGAGGATGATTTAGATGAGGATTTTCGTGGGGATGAT-ATGGCTGCCTCTG 335
Query 136 ATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTGATACCTCGGCTGAGC 195
|||| || || || || ||||||||||| ||||||||| ||||||| || || ||||| |
Sbjct 336 ATTCCGATGTCGATGAGTTTGACTACTCTAATAATAAAATAGCTGACACTTCAGCTGACC 395
Query 196 AAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGACTTAGTATTTCTAGAG 255
|||| |||||||||||||| |||||||||||||| |||||||| ||||||||| | ||||
Sbjct 396 AAGCCCGGAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACGAGAG 455
Query 256 AGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAAATGTCCCTAATTCTG 315
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 456 AGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTG 515
Query 316 GGGAATCCTCA-GAAAAGGTTTGCAAGGTCACACAGAAAGGGGGACTATTTTATGATTTC 374
||||||| ||| | ||| | ||||| || |||||||||||||| || ||||||||||||
Sbjct 516 GGGAATCTTCAGGGAAA-GATTGCATGGCCACACAGAAAGGGGCTCTTTTTTATGATTTC 574
Query 375 TGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGCTGAGGAATTTGGTG 434
||||||||| || ||||||| || || | ||| || ||||||||| |||||||||||||
Sbjct 575 TGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTGGTT 634
Query 435 TGGGCAACTTCTAAGCATGACGTGTATCTTATGTCA-AACT-TCCTGGTTA-CACATTAT 491
||||||||||||||||| || || || ||||||||| || | | |||| | | || |||
Sbjct 635 TGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAA-TAT-TTGGTGAGC-CACTAT 691
Query 492 TCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATGTTGCACCATCC 551
||| || | || |||||||||||||| ||||||||||||| ||||||||| | |||||
Sbjct 692 TCTACTTTGACATCCGGAAAGCATGATGTTCTCAATGTTCAAGGTCATGTTTCCCCATCT 751
Query 552 GAGAAACATCCTGGAAGTTTACTT-GAAGGATTTACGCAA-ACTCAAGTAAGTACACTTG 609
|||||||||||||||||||| || || |||||||| || |||||||| |||||||| |
Sbjct 752 GAGAAACATCCTGGAAGTTT-GTTGGAGGGATTTAC-AAAGACTCAAGTGAGTACACTCG 809
Query 610 CAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTTGCAAGCATC 669
|||| | ||| | ||| ||||||| || || ||||||||||||||||| ||||||||||
Sbjct 810 CAGTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATC 869
Query 670 TTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATGCTATAACCA 729
|||||||||| ||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 870 TTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCA 929
Query 730 ATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCTCGAATAATG 789
||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 930 ATGCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCGTCGAATAATG 989
Query 790 ACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCA-TTTCCGTTTT 848
| |||||||| ||||| ||||| ||||||||||||||||||||||| || ||| || |||
Sbjct 990 ATTGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCAGTTT-CGCTTT 1048
Query 849 CCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTATTGTTGGA 908
|| ||||| ||||||||| | ||||| ||||||||||||||||| || | ||||| |||
Sbjct 1049 CCATGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTGTTGACGATTGTGGGA 1108
Query 909 GACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAACTCTATCA 968
|||||||| || ||||| | |||||||||||||| |||||||| ||| ||| ||||||
Sbjct 1109 GACAACCCTGAAAGCCTTCTGGTAGACCCCAACACTGGAAAGACACTGGCAACGCTATCA 1168
Query 969 GGACACT-TGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTTTCTCAAC 1027
||||| | |||||||||||||||| || || ||||| || |||||| |||| ||||| ||
Sbjct 1169 GGACA-TCTGGACTTTTCCTTTGCATCAGCATGGCACCCAGATGGATTCACGTTCTCCAC 1227
Query 1028 AGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGTCCGTTGC 1087
||| |||||||||||||| ||||| || |||||||| || ||||| || || || |||||
Sbjct 1228 AGGTAACCAGGACAAGACCTGCCGGGTTTGGGACATTCGTAACCTGTCAAAATCTGTTGC 1287
Query 1088 TGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATGGAAAATA 1147
|||||||| ||||||||| ||||||||||| || || ||||||||||| ||||| || ||
Sbjct 1288 TGTCTTGAGGGGTAACCTTGGAGCAATCCGATCCATTCGCTACACATCTGATGGGAAGTA 1347
Query 1148 CATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACGGGTATGA 1207
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1348 CATGGCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGA 1407
Query 1208 AACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATC-TTTCAGCCCTGACA 1266
||| ||||| || ||||||||||||||||||||||| |||||||| ||| ||||| ||||
Sbjct 1408 AACGGAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTT-AGCCCCGACA 1466
Query 1267 CAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGTTTGGTC 1326
|||| || || || || || || |||||||||||||| || || || |||||| | | |
Sbjct 1467 CAGAAGCACTCTTCATAGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATAGCC 1526
Query 1327 GGCGC-AGGAACTATTCCTACCTTGA 1351
||||| | ||||| |||||||||||
Sbjct 1527 GGCGCCAC-AACTACTCCTACCTTGA 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5