BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929096
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2089 0.0
AT1G55360.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1380 0.0
AT2G44210.2 | Symbols: | Protein of Unknown Function (DUF239) ... 255 6e-67
> AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr3:4403500-4406091 FORWARD LENGTH=1886
Length=1886
Score = 2089 bits (1131), Expect = 0.0
Identities = 1249/1306 (96%), Gaps = 7/1306 (1%)
Strand=Plus/Plus
Query 1 TTTCTGGGTTTACTGTGACAATGGGAGCTGTGCATTTTAGCCTGGTGAAGTTAAACAGAG 60
|||||||||||| || |||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 257 TTTCTGGGTTTATTGCGACAATGGGAGCTGAGCATTTTAGCCTGGTGAAGTTCAATAGAG 316
Query 61 GTTTCTTAGTGTGTTTATGGCTGTGGGGGATGCTCTCGCTATCCTGCGCAGCAGCGAGGT 120
||||||| |||||||||||| || ||||||||||||||| |||||||||||||| |
Sbjct 317 GTTTCTTTGTGTGTTTATGG--GT----GATGCTCTCGCTATCTTGCGCAGCAGCGAGCT 370
Query 121 ATGGCTCTTCAAGGCAGAAGTTTGAGGTGAAGAAGCACTTGAATAGGCTCAACAAACCTC 180
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 371 ATGGCTCTTCAAGGCAAAAGTTTGAGGTGAAGAAGCATTTGAATAGGCTCAACAAACCTC 430
Query 181 CTGTTAAGACCATTCAGAGTCCAGATGGAGATATAATCGACTGTGTTCCTATCTCAAAGC 240
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 431 CTGTTAAGACTATTCAGAGTCCAGATGGAGATATAATCGACTGTATTCCTATTTCAAAGC 490
Query 241 AGCCAGCTTTTGACCACCCTTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACC 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGCCAGCTTTTGACCACCCCTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACC 550
Query 301 ACCCTGAAGGGCTCTTTGATGACAATAAGGTATCTGCAAAACCAGAGGGGAAAGCAACTC 360
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 551 ACCCAGAAGGGCTCTTTGATGACAATAAGGTATCTGCTGAACCAAAGGGGAAAGAAACTC 610
Query 361 ATATCCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACGATTCCCGTGAGGA 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 611 ATATCCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACCATTCCCATGAGGA 670
Query 421 GGACAAAGGAGGATGATGTGTTGAGAGCAAGTTCAATCAAAAGATACGGCAAGAAGAAGC 480
|||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 671 GGACAAGGGAGGATGATGTGTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGC 730
Query 481 ATAGGTCTGTTCCTATTCCTAAATCTGCAGAACCTGACCTCATCAACCAAAATGGTCATC 540
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 731 ATAGGTCTGTTCCTATTCCTAAATCTGCGGAACCCGACCTCATCAACCAAAATGGTCATC 790
Query 541 AGCACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATG 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AACACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATG 850
Query 601 TGTGGGAGCCAAAGATACAGAACACAAATGAATTCAGCTTGTCGCAGATATGGCTTTTGG 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 851 TGTGGGAGCCAAAGATACAGAACACAAACGAATTCAGCTTGTCGCAGATATGGCTTTTGG 910
Query 661 GTGGTTCCTTTGGACAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTGAGCCCGGATC 720
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 911 GGGGTTCCTTTGGACAAGATCTTAACAGTATTGAAGCTGGCTGGCAGGTGAGTCCGGATC 970
Query 721 TATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTA 1030
Query 781 CCGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAATCAACAGTGACATAGCAATGG 840
||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1031 CCGGTTGCTACAATCTTCTTTGCTCAGGTTTCATTCAAATCAACAGTGACATAGCAATGG 1090
Query 841 GAGCAAGCATTTCACCAGTCTCTGGATATCGTAATTCCCAGTACGATATTAGTATTCTAA 900
|||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct 1091 GAGCAAGCATCTCACCAGTCTCTGGATACCGCAATTCCCAGTATGATATCAGTATTCTAA 1150
Query 901 TCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 1210
Query 961 GGTACTGGCCATCATTTCTCTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1020
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GGTACTGGCCATCATTTCTGTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1270
Query 1021 GAGGAGAAGTTGTGAACTCGCAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1080
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 GAGGAGAAGTTGTGAACTCACAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1330
Query 1081 GTCACTTCCCAGAAGAAGGTTTCAGCAAAGCAAGTTACTTTCGGAACATTCAAGTCGTAG 1140
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1331 GTCACTTTCCAGAAGAAGGTTTCAGTAAAGCAAGTTACTTTCGGAACATTCAAGTCGTAG 1390
Query 1141 ATGGATCTAACAACCTCAAAGCACCAAAAGGACTGGGTACATTCACCGAGAAGTCCAACT 1200
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1391 ATGGATCCAACAACCTCAAAGCACCAAAAGGACTTGGTACATTCACCGAGAAGTCCAACT 1450
Query 1201 GTTATGATGTTCAAACCGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTGGTC 1260
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GTTATGATGTTCAAACGGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTGGTC 1510
Query 1261 CCGGTAAGAACAAGAACTGCCCATAAGCC-GGGCATGTGTAGTGTT 1305
|||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1511 CCGGTAAGAACAAGAACTGCCCATAAACCCGGGCATGTGTAGTGTT 1556
> AT1G55360.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:20666222-20668726 REVERSE LENGTH=1797
Length=1797
Score = 1380 bits (747), Expect = 0.0
Identities = 1117/1293 (86%), Gaps = 35/1293 (3%)
Strand=Plus/Plus
Query 15 GTGACAATGGGA-G-CT-GTGCATTTTAGC-CTGGTGAAGTTAAAC-AGAGGTTTCTTAG 69
|||||||||||| | | |||||| ||||| | || |||||| | | |||||||||||||
Sbjct 219 GTGACAATGGGAGGAGTGGTGCATCTTAGCAC-GGCGAAGTT-AGCTAGAGGTTTCTTAG 276
Query 70 TGTGTTTATGGCTGTGGGGGATGCTCTCGCTATCCTGCGCAGCAGCGAGGTATGGCTCT- 128
|||||||||| || ||||| | |||||||||| | ||| | || |||| ||| |
Sbjct 277 TGTGTTTATGTCTTTGGGGTTTTTTCTCGCTATCATACGC--C-GCAAGGTCCGGC-GTA 332
Query 129 TCAAGGCAGAAGTTTGAGGTGAAGAAGCACTTGAATAGGCTCAACAAACCTCCTGTTAAG 188
|||| |||||||||||| |||||||| || ||||| ||||| ||||||||| |||| ||
Sbjct 333 TCAAAGCAGAAGTTTGAAGTGAAGAAACATTTGAACAGGCTGAACAAACCTGCTGTCAAA 392
Query 189 ACCATTCAGAGTCCAGATGGAGATATAATCGACTGTGTTCCTATCTCAAAGCAGCCAGCT 248
| |||||||||| ||||||| ||| | || ||||||||||| ||||||||||| ||||||
Sbjct 393 AGCATTCAGAGTTCAGATGGTGATGTGATTGACTGTGTTCCAATCTCAAAGCAACCAGCT 452
Query 249 TTTGACCACCCTTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACCACCCTGAA 308
||||| || || ||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 453 TTTGATCATCCGTTCCTCAAAGATCACAAGATTCAGATGAAGCCTAATTACCACCCTGAA 512
Query 309 GGGCTCTTTGATGACAA-TAAG-GTAT-CTGCAAAACCAGAGGGGAAAGCAA-CTCATAT 364
|| |||||||||||||| ||| || | || | ||| || | | ||||| || |||||
Sbjct 513 GGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAG-AAGGGCATAT 571
Query 365 CCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACGATTCCCGTGAGGAGGAC 424
|||||||||||||| || ||||| |||||| |||||||||| |||||| ||||||||||
Sbjct 572 TCCTCAGTTGTGGCATCGATATGGTAAATGTTCTGAAGGAACTATTCCCATGAGGAGGAC 631
Query 425 AAAGGAGGATGATGTGTTGAGAGCAAGTTCAATCAAAAGATACGGCAAGAAGAAGCATAG 484
|||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||| |||
Sbjct 632 AAAGGAAGATGATGTTTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCGTAG 691
Query 485 GTCTGTTCCTATT-CCTAAATCTGCAGAACCTGACCTCATCAACCAAAATGGTCATCAGC 543
||| ||| || ||||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 692 AAGTGTCCCT-TTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGC 750
Query 544 ACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATGTGT 603
| |||||||||||||| ||||||||||||||||| ||||||||||| ||| | |||||||
Sbjct 751 ATGCCATAGCTTATGTAGAAGGAGATAAGTACTATGGAGCTAAGGCTACTATAAATGTGT 810
Query 604 GGGAGCCAAAGATACAGAACA-CA-AATGAATTCAGCTTGTCGCAGATATGGCTT-TTGG 660
||||||||||||||||| || || ||||| ||||||||||| |||||||||||| || |
Sbjct 811 GGGAGCCAAAGATACAG--CAGCAGAATGAGTTCAGCTTGTCACAGATATGGCTTCTT-G 867
Query 661 GTGGTTCCTTTGGACAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTGAGCCCGGATC 720
|||| || || |||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 868 GTGGCTCATTCGGACAAGATCTTAATAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATC 927
Query 721 TATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTA 780
| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 928 TGTATGGTGACAATAACACGAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTA 987
Query 781 CCGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAATCAACAGTGACATAGCAATGG 840
||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 988 CCGGTTGCTACAATCTTCTTTGCTCCGGTTTTATTCAAATCAACAGTGACATAGCAATGG 1047
Query 841 GAGCAAGCATTTCACCAGTCTCTGGATATCGTAATTCCCAGTACGATATTAGTATTCTAA 900
||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| |
Sbjct 1048 GAGCAAGCATTTCCCCGGTCTCTGGATATCGTAACTCGCAGTACGATATCAGTATTCTGA 1107
Query 901 TCTGGAAGGATCC-AAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTG 959
||||||||||||| ||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 1108 TCTGGAAGGATCCTAAA-GAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTA 1166
Query 960 GGGTACTGGCCATCATTTCTCTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGG 1019
|| || |||||||| ||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1167 GGCTATTGGCCATCTTTTCTCTTCTCCTACTTGACAGAAAGTGCATCGATGATTGAATGG 1226
Query 1020 GGAGGAGAAGTTGTGAACTCGCAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGT 1079
||||||||||| |||||||| || ||||| ||||| ||||||| ||||| ||||| |||
Sbjct 1227 GGAGGAGAAGTCGTGAACTCACAATCAGATGGCCAGCACACTTCAACACAAATGGGCAGT 1286
Query 1080 GGTCACTTCCCAGAAGAAGG-TTTCAGCAAAGCAAGTTACTTTC-GGAACATTCAAGTCG 1137
||| | || ||||||||||| ||| ||||||||||||||| ||| |||||||||| || |
Sbjct 1287 GGTAAATTTCCAGAAGAAGGCTTT-AGCAAAGCAAGTTAC-TTCAGGAACATTCAGGTGG 1344
Query 1138 TAGATGGATCTAACAACCTCAAAGCACCAAAAGGACTGGGTACATTCACCGAGA-AGTCC 1196
| ||||| || ||||||||||| ||||| |||||||| || |||||||| || | ||||
Sbjct 1345 TTGATGGGTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGA-ACAGTCT 1403
Query 1197 AACTGTTATGATGTTCAAACCGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGT 1256
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1404 AACTGTTATGATGTTCAAACCGGAAGCAATGATGATTGGGGTCATTACTTTTACTATGGA 1463
Query 1257 GGTCCC-GGTAAGAACAAGAACTGCCCATAAGC 1288
|| ||| ||||| ||| |||| || ||||||||
Sbjct 1464 GG-CCCTGGTAAAAACCAGAAGTGTCCATAAGC 1495
> AT2G44210.2 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18280623-18282876 FORWARD LENGTH=1809
Length=1809
Score = 255 bits (138), Expect = 6e-67
Identities = 478/639 (75%), Gaps = 35/639 (5%)
Strand=Plus/Plus
Query 528 CAAAATGGTCATCAGCACGCCATAGCT-TATGTGGAAGGA-GATAAGTACTACGGAGCTA 585
|||||||||||||||||||| ||| | ||||| ||| || | | |||||| ||||
Sbjct 763 CAAAATGGTCATCAGCACGCGATA-ATGTATGTCGAA-GATGGGGTTTTCTACGGGGCTA 820
Query 586 AGGCGACTTTGAATGTGTGGGAGCCAAAGATACAG-AA--CACAAATGAATTCAGCTT-G 641
| |||| | ||||| ||| |||| ||| | || | | ||||| || ||||| |
Sbjct 821 AAGCGAAGATAAATGTATGGAAGCC--GGATGTTGAAATGC-CTAATGAGTTTAGCTTAG 877
Query 642 TCGCAGATATGGCTTTTGGGTGGTTCCTTTGGAC-AAGATCTTAACAGCATTGAAGCTGG 700
| ||||| ||| |||| ||||| ||| || |||||||| || |||||||||||
Sbjct 878 -CTCAGATTTGGGTTTTAGGTGG-AAATTTCAACTCTGATCTTAATAGTATTGAAGCTGG 935
Query 701 CTGGCAGGTGAGCCC-GGATCTATATGGAGACAATAACACAAGACTCTTCACTTACTGGA 759
||||||||| ||||| || | ||||| || |||| || |||||||||||||| ||||
Sbjct 936 CTGGCAGGTCAGCCCACAAT-TGTATGGTGATAATAGGACCAGACTCTTCACTTATTGGA 994
Query 760 CTAGTGATGCCTATCAA-GCTACCGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAA 818
|||||||||| || ||| || || || ||||| || | ||| ||||| || ||| |||||
Sbjct 995 CTAGTGATGCATACCAAGGC-ACAGGCTGCTATAATCTTCTATGCTCAGGATTTGTTCAA 1053
Query 819 ATCAACAGTGACATAGCAATGGGAGCAAGC-ATTTCACCAGTCTCTGGA-TATCGTAATT 876
||||| || || || |||||||| | | | || || || | || | ||| | || |
Sbjct 1054 ATCAATAGAGAAATCGCAATGGGTG-GATCAATCTCTCCTTTATC-AAACTATGGAAACT 1111
Query 877 CCCAGTACGATATTAGTATTCTAATCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGC 936
| || || || || | || || ||||||||||||||||| || |||||||||||| | |
Sbjct 1112 CTCAATATGACATCACCATACTCATCTGGAAGGATCCAAAAGAAGGACATTGGTGGTTAC 1171
Query 937 AATTTGGGA-ATG-GGTATGTTTTGGGGTACTGGCCATCATT-TCTCTTCTCCTACCTAA 993
| ||| ||| | | || | | || ||||||||| | || |||||||| ||| ||
Sbjct 1172 AGTTT-GGAGA-GAAATACATAATAGGATACTGGCCAGC-TTCACTCTTCTCTTACTTAT 1228
Query 994 CAGAAAGTGCATCGATGATCGAATGGGGAGGAGAAGTTGTGAACTCGCAGTC--AG-AAG 1050
||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |||
Sbjct 1229 CAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACTCGCAGTCCGAGGAAG 1288
Query 1051 GCCACCACACTTGGACACAGATGGGAAGTGGTCAC-TTCCCAGAAGAAGGTTTCAGCAAA 1109
| || ||||| || |||||||||||||| | || |||| ||||||| | |||
Sbjct 1289 GACAACACACAACCACTCAGATGGGAAGTGGG-AGGTTTGCAGAGGAAGGTTGGGGAAAA 1347
Query 1110 GCAAGTTACTTTCG-GAACATTCAAGTCGTAGATGGATC 1147
|| |||||||| | |||| ||||||| || ||||||||
Sbjct 1348 GCGAGTTACTT-CAAGAACGTTCAAGTAGTTGATGGATC 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5