BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929099 Length=809 Score E Sequences producing significant alignments: (Bits) Value AT3G13540.1 | Symbols: ATMYB5, MYB5 | myb domain protein 5 | ch... 1223 0.0 > AT3G13540.1 | Symbols: ATMYB5, MYB5 | myb domain protein 5 | chr3:4420173-4421701 FORWARD LENGTH=1074 Length=1074 Score = 1223 bits (662), Expect = 0.0 Identities = 766/815 (94%), Gaps = 12/815 (1%) Strand=Plus/Plus Query 1 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGTGAAGAAACCTGTTTCGAAGAAAA 60 |||||||||||||||||||||||||||||||||||| |||||| || || || ||||||| Sbjct 47 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGGGAAGAAGCCAGTGTCTAAGAAAA 106 Query 61 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAGGACG 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 107 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAAGACG 166 Query 121 AGATTCTTGTGAGCTTCATAAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 167 AGATTCTTGTGAGCTTCATTAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 226 Query 181 GAGCTGGTTTACTCCGATGTGGAAAGAGCTGCCGTCTTCGGTGGATGAACTATCTCCGAC 240 |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 227 GAGCTGGTTTACTCAGATGTGGAAAGAGCTGTCGTCTACGGTGGATGAACTATCTCCGAC 286 Query 241 CGTCGGTTAAACGCGGCGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGCCTTCACC 300 | ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 287 CCTCGGTTAAACGTGGAGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGTCTTCACC 346 Query 301 GCCTTCTAGGCAACCGGTGGTCACTGATCGCTGGAAGGATACCGGGAAGGACTGATAACG 360 |||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| | Sbjct 347 GCCTCCTCGGCAACAGGTGGTCATTGATCGCGGGAAGGATACCGGGAAGGACTGATAATG 406 Query 361 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 466 Query 421 CTCAAACCCACAAGCCTCTTGATGCAAACAACGTCC-TCAAACAAGATGAAGAAGTTTCC 479 |||||||||||||||||||||||||||||||| ||| | |||| ||| |||||||||||| Sbjct 467 CTCAAACCCACAAGCCTCTTGATGCAAACAACATCCAT-AAACCAGAAGAAGAAGTTTCC 525 Query 480 GGTGGACAAAA---CCC-CATAGAGCCTATTTCTAGTTCTCATACCGATGATACCACCGT 535 ||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||| || Sbjct 526 GGTGGACAAAAGTACCCTC-TAGAGCCTATTTCTAGTTCTCATACTGATGATACCACTGT 584 Query 536 TAATAGCGGGGATGGAGATAGCAAGAACAGTATTAATGTCTTTGGTGGTGAA-AGCGGCT 594 |||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 585 TAATGGCGGGGATGGAGATAGCAAGAACAGTATCAATGTCTTTGGTGGTGAACA-CGGCT 643 Query 595 ACGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTTATCA 654 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 644 ACGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTCATCA 703 Query 655 ACGATGATGCTGATCCTTTTGGTAACATTATGCCAATATCTCAACCGTTGCAGATGGATG 714 |||||| || ||||||||||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 704 ACGATGTTGGTGATCCTTTTGGTAATATTATCCCAATATCTCAACCTTTGCAGATGGATG 763 Query 715 ATTGTAAGGATGAGATTGTTGGAGCGTCGTCATCTAGCTTAGGACATGACCTGCAGAGAC 774 |||||||||||| |||||||||||||||||| |||||||||||||||||| | ||| || Sbjct 764 ATTGTAAGGATGGGATTGTTGGAGCGTCGTCTTCTAGCTTAGGACATGAC-T--AGATAC 820 Query 775 AAGAAGATATATAGTTGATCGAATCTTGATGTCTT 809 | ||||||||||||||||||||||||||||||||| Sbjct 821 AGGAAGATATATAGTTGATCGAATCTTGATGTCTT 855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39383571248 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5