BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929099
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13540.1 | Symbols: ATMYB5, MYB5 | myb domain protein 5 | ch... 1223 0.0
> AT3G13540.1 | Symbols: ATMYB5, MYB5 | myb domain protein 5 |
chr3:4420173-4421701 FORWARD LENGTH=1074
Length=1074
Score = 1223 bits (662), Expect = 0.0
Identities = 766/815 (94%), Gaps = 12/815 (1%)
Strand=Plus/Plus
Query 1 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGTGAAGAAACCTGTTTCGAAGAAAA 60
|||||||||||||||||||||||||||||||||||| |||||| || || || |||||||
Sbjct 47 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGGGAAGAAGCCAGTGTCTAAGAAAA 106
Query 61 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAGGACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 107 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAAGACG 166
Query 121 AGATTCTTGTGAGCTTCATAAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AGATTCTTGTGAGCTTCATTAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 226
Query 181 GAGCTGGTTTACTCCGATGTGGAAAGAGCTGCCGTCTTCGGTGGATGAACTATCTCCGAC 240
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 227 GAGCTGGTTTACTCAGATGTGGAAAGAGCTGTCGTCTACGGTGGATGAACTATCTCCGAC 286
Query 241 CGTCGGTTAAACGCGGCGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGCCTTCACC 300
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 CCTCGGTTAAACGTGGAGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGTCTTCACC 346
Query 301 GCCTTCTAGGCAACCGGTGGTCACTGATCGCTGGAAGGATACCGGGAAGGACTGATAACG 360
|||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 347 GCCTCCTCGGCAACAGGTGGTCATTGATCGCGGGAAGGATACCGGGAAGGACTGATAATG 406
Query 361 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 466
Query 421 CTCAAACCCACAAGCCTCTTGATGCAAACAACGTCC-TCAAACAAGATGAAGAAGTTTCC 479
|||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||
Sbjct 467 CTCAAACCCACAAGCCTCTTGATGCAAACAACATCCAT-AAACCAGAAGAAGAAGTTTCC 525
Query 480 GGTGGACAAAA---CCC-CATAGAGCCTATTTCTAGTTCTCATACCGATGATACCACCGT 535
||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 526 GGTGGACAAAAGTACCCTC-TAGAGCCTATTTCTAGTTCTCATACTGATGATACCACTGT 584
Query 536 TAATAGCGGGGATGGAGATAGCAAGAACAGTATTAATGTCTTTGGTGGTGAA-AGCGGCT 594
|||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 585 TAATGGCGGGGATGGAGATAGCAAGAACAGTATCAATGTCTTTGGTGGTGAACA-CGGCT 643
Query 595 ACGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTTATCA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 644 ACGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTCATCA 703
Query 655 ACGATGATGCTGATCCTTTTGGTAACATTATGCCAATATCTCAACCGTTGCAGATGGATG 714
|||||| || ||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 704 ACGATGTTGGTGATCCTTTTGGTAATATTATCCCAATATCTCAACCTTTGCAGATGGATG 763
Query 715 ATTGTAAGGATGAGATTGTTGGAGCGTCGTCATCTAGCTTAGGACATGACCTGCAGAGAC 774
|||||||||||| |||||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 764 ATTGTAAGGATGGGATTGTTGGAGCGTCGTCTTCTAGCTTAGGACATGAC-T--AGATAC 820
Query 775 AAGAAGATATATAGTTGATCGAATCTTGATGTCTT 809
| |||||||||||||||||||||||||||||||||
Sbjct 821 AGGAAGATATATAGTTGATCGAATCTTGATGTCTT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5