BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929107
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13620.1 | Symbols: | Amino acid permease family protein | ... 2314 0.0
> AT3G13620.1 | Symbols: | Amino acid permease family protein
| chr3:4450745-4452624 REVERSE LENGTH=1664
Length=1664
Score = 2314 bits (1253), Expect = 0.0
Identities = 1402/1475 (95%), Gaps = 5/1475 (0%)
Strand=Plus/Plus
Query 3 aaaaaaaGAACACAAAAAATGACAATCTCAGAGACATCGAGATCAAGCCACGAGCTCCCA 62
|||| || ||||| ||||||| ||||||||||| |||||| ||| |||||||||||||||
Sbjct 53 AAAACAA-AACAC-AAAAATGGCAATCTCAGAGGCATCGAAATCGAGCCACGAGCTCCCA 110
Query 63 TTAACAACAGCCGAATCAAGCGGAAACAGAGCAACCGCTAAGAAACTGACTTTGATCCCT 122
|||||||||||||||| ||||| || | ||||||||| |||||||||||||| ||||||
Sbjct 111 GTAACAACAGCCGAATCCAGCGGGAAGAAAGCAACCGCAAAGAAACTGACTTTAATCCCT 170
Query 123 TTGGTTTTCCTTATTTACTTTGAGGTCGCTGGTGGTCCATTTGGTGAAGAACCGGCGGTT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTGGTTTTCCTTATTTACTTTGAGGTCGCTGGTGGTCCATTTGGTGAAGAACCGGCGGTT 230
Query 183 CAAGCGGCTGGACCGCTTTTAGCGATTCTCGGTTTCCTTATCTTCCCTTTCATTTGGAGT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CAAGCGGCTGGACCGCTTTTAGCGATTCTCGGTTTCCTTATCTTCCCTTTCATTTGGAGT 290
Query 243 GTCCCTGAGGCCCTAATCACCGCTGAGCTCTCCACTGCGTTTCCAGGCAACGGAGGGTTT 302
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 291 ATCCCTGAAGCCCTAATCACTGCAGAGCTCTCCACTGCGTTTCCAGGCAACGGAGGGTTT 350
Query 303 GTGATATGGGCACATCGGGCATTTGGTTCTTTCGTGGGCTCAATGATGGGTTCGTTGAAG 362
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 GTGATATGGGCGCATCGAGCATTTGGCTCTTTCGTGGGCTCAATGATGGGTTCGTTGAAG 410
Query 363 TTCCTGAGTGGTGTGATTAACGTTGCTTCGTTTCCTGTACTCTGTGTTACTTACTTGGAT 422
||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 411 TTCCTTAGTGGGGTGATTAACGTTGCTTCGTTTCCTGTTCTCTGTGTCACTTACTTGGAT 470
Query 423 AAGCTATTCCCTGTTCTTGAATCCGGATGGCCCCGAAATGTCTGCATTTTCGCCTCAACG 482
||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 471 AAGCTCTTCCCTGTTCTTGAATCCGGATGGCCTCGAAATGTCTGCATATTCGCCTCGACG 530
Query 483 GTGGTCTTATCTTTCTTAAACTATACTGGCTTAGCCATTGTGGGTTACGCAGCTGTCGTT 542
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 531 GTGGTCTTGTCTTTCTTAAACTATACTGGCTTAGCCATTGTAGGTTACGCAGCTGTTGTG 590
Query 543 CTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTTATGTCGGCTATGGCAATCCCTAAGATC 602
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 591 CTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTCATGTCGGCTATGGCTATCCCTAAGATC 650
Query 603 AAACCTCACCGTTGGGGTAGCTTAGGAAACAAGAAAAAAGATTGGAATCTCTACTTCAAC 662
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 651 AAACCTCACCGTTGGGGTAGTTTAGGAACCAAGAAAAAGGATTGGAATCTCTACTTCAAC 710
Query 663 ACACTCTTTTGGAACTTGAATTTCTGGGACAATGTCAGTACTCTTGCAGGGGAAGTGGAC 722
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ACACTCTTCTGGAACTTGAATTTCTGGGACAATGTCAGTACTCTTGCAGGGGAAGTGGAC 770
Query 723 GAGCCTCAAAAGACATTCCCGTTGGCGCTTCTTATCGCTGTGATCTTCACTTGTGTTGCT 782
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 771 GAGCCTCAAAAGACGTTCCCTTTGGCGCTTCTTATCGCTGTGATCTTCACTTGTGTAGCT 830
Query 783 TACTTGATTCCTCTTTTCGCTGTCACGGGTGCAGTCTCAGTAGATCAGAGCAGATGGGAA 842
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 831 TACTTGATTCCTCTTTTCGCTGTCACGGGTGCGGTCTCGGTAGATCAGAGCAGATGGGAA 890
Query 843 AACGGGTTTCACGCAGAAGCAGCTGAGATGATTGCAGGGAAATGGCTGAAAATATGGATT 902
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 AACGGGTTTCACGCAGAAGCAGCTGAGATGATTGCAGGGAAATGGTTGAAAATATGGATT 950
Query 903 GAGATCGGCGCTGTCTTATCAAGTATCGGACTTTTCGAAGCTCAGTTAAGCAGTAGTGCT 962
||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 951 GAGATTGGTGCTGTCTTATCGAGCATTGGACTTTTCGAAGCTCAGTTAAGCAGTAGTGCT 1010
Query 963 TATCAGCTGGAGGGGATGGCGGAAATGGGGTTCCTGCCTAAATTCTTTGGGGTACGATCG 1022
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||
Sbjct 1011 TATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTCTTTGGGGTACGGTCG 1070
Query 1023 AAATGGTTCAACACCCCTTGGCTCGGGATTCTAATCTCAGCTCTCATGTCGCTCGGATTA 1082
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1071 AAATGGTTCAACACTCCTTGGGTCGGGATTCTAATCTCAGCTCTCATGTCGCTCGGGTTA 1130
Query 1083 TCATACATGAACTTCACAGACATCATATCCTCGGCAAATTTCTTGTACACTTTAGGGATG 1142
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1131 TCGTACATGAACTTCACAGACATCATATCCTCGGCGAATTTCTTGTACACTCTAGGGATG 1190
Query 1143 TTTCTAGAGTTTGCGTCTTTCATTTGGTTAAGAAGAAAACTACCTG-GTTTAAAGAGACC 1201
|||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1191 TTTCTAGAGTTTGCATCTTTCATTTGGTTAAGAAGAAAACTACCTCAGCT-AAAGAGACC 1249
Query 1202 TTACCGAGTTCCGCTGAAAATACCGGGGCTGGTGGTTATGTGCTTGATACCTTCGGCGTT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TTACCGAGTTCCGCTGAAAATACCGGGGCTGGTGGTTATGTGCTTGATACCTTCGGCGTT 1309
Query 1262 TCTAGTGCTGATTATAGTGTTTGCTACTAAGATCGTGTACCTTATTTGCGGTGTAATGAC 1321
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1310 TCTAGTGCTGATTTTAGTGTTTGCTACTAAGATTGTGTACCTTATTTGCGGTGTAATGAC 1369
Query 1322 CATAGGAGCTATCGGTTGGTACTTCTTGATCAACTACTTCAGGAAGAAGAAGATCTTCGA 1381
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1370 CATAGGAGCAATCGGTTGGTACTTCTTGATCAACTACTTCAGAAAGACGAAGATCTTCGA 1429
Query 1382 ATTCAACGAAGTTATTGATGATCTTGACAACAATGTCAACGGAGAACATCCCAAAGTCGA 1441
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATTCAACGAAGTTATCGATGATCTTGACAACAATGTCAACGGAGAACATCCCAAAGTCGA 1489
Query 1442 TGATCACAATTCATGATA-GATTTAAACAGAGGAT 1475
|||||||||||||||||| || |||||||||||||
Sbjct 1490 TGATCACAATTCATGATAAGAGTTAAACAGAGGAT 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5