BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929108
Length=250
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein... 244 2e-64
AT4G19210.1 | Symbols: ATRLI2, RLI2 | RNAse l inhibitor protein... 183 5e-46
> AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein
1 | chr3:4458461-4461733 REVERSE LENGTH=2197
Length=2197
Score = 244 bits (132), Expect = 2e-64
Identities = 180/204 (88%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 36 GAAGAACAACCATCTATCAAGTGTATGGCTCATTCTTTACAGTCACTACTCAGTGAAATG 95
|||| ||| ||| || |||||||||| ||||||||| |||||| || ||||||| ||||
Sbjct 1713 GAAGGACAGCCAGCTGTCAAGTGTATTGCTCATTCTCCACAGTCGCTGCTCAGTGGAATG 1772
Query 96 AACCTCTTCTTATCGCACTTGAACATCACATTTAGAAGGGATCCGACTAACTTCAGGCCA 155
|||| |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1773 AACCACTTCCTATCGCACTTGAACATCACATTCAGACGGGATCCGACTAACTTCAGGCCA 1832
Query 156 AGGATCAACAAATTAGAGTCCACCAAAGACAGGGAACAAAAGTCTGCAGGCTCATACTAC 215
||||| |||||| ||||||||| ||| |||| ||| |||||| ||||||| |||||||||
Sbjct 1833 AGGATAAACAAACTAGAGTCCATCAAGGACAAGGAGCAAAAGACTGCAGGATCATACTAC 1892
Query 216 TACTTGGACGACTGATTGATCGGT 239
||||| ||||| ||||||||||||
Sbjct 1893 TACTTAGACGATTGATTGATCGGT 1916
> AT4G19210.1 | Symbols: ATRLI2, RLI2 | RNAse l inhibitor protein
2 | chr4:10501200-10505217 FORWARD LENGTH=2279
Length=2279
Score = 183 bits (99), Expect = 5e-46
Identities = 162/192 (84%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 35 TGAAGAACAACCATCTATCAAGTGTA-TGGCTCATTCT-TTACAGTCACTACTCAGTGAA 92
||||| ||||||||| || | |||| | || ||| | | || ||||| ||||||| |
Sbjct 1750 TGAAGGACAACCATCCATTGATTGTACT-GCAAATTGTCCT-CAATCACTGCTCAGTGGA 1807
Query 93 ATGAACCTCTTCTTATCGCACT-TGAACATCACATTTAGAAGGGATCCGACTAACTTCAG 151
||||| ||||||||||| || | ||||||||||||| ||| ||||||| || || |||||
Sbjct 1808 ATGAATCTCTTCTTATCTCA-TCTGAACATCACATTCAGACGGGATCCCACCAATTTCAG 1866
Query 152 GCCAAGGATCAACAAATTAGAGTCCACCAAAGACAGGGAACAAAAGTCTGCAGGCTCATA 211
||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1867 ACCAAGAATCAACAAATTGGAGTCGACCAAAGACAGGGAACAGAAGTCTGCAGGCTCATA 1926
Query 212 CTACTACTTGGA 223
||||||||||||
Sbjct 1927 CTACTACTTGGA 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11360511274
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5