BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929111

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13650.1 | Symbols:  | Disease resistance-responsive (dirige...   846    0.0  


> AT3G13650.1 | Symbols:  | Disease resistance-responsive (dirigent-like 
protein) family protein | chr3:4462892-4463872 FORWARD 
LENGTH=981
Length=981

 Score =  846 bits (458),  Expect = 0.0
 Identities = 509/534 (95%), Gaps = 1/534 (0%)
 Strand=Plus/Plus

Query  37   GCCGTTGTCTCCGCCGGAAAAGGC-AAAACTTTGCAAAAACCATTGACAAAAAACACTTC  95
            |||||||| |||||| | |||||| ||||||||||||||||||||||||||||||| || 
Sbjct  213  GCCGTTGTTTCCGCCCGTAAAGGCGAAAACTTTGCAAAAACCATTGACAAAAAACATTTT  272

Query  96   GGCCTCCGTAAGGAGAAACTCACTCATTTCCGTGTCTACTGGCACGACATTTTAAGCGGC  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  GGCCTCCGTAAGGAGAAACTCACTCATTTCCGTGTCTACTGGCACGACATTTTAAGCGGC  332

Query  156  TCAAACCCTAGCTCGGTCGTGATCAACCCTCCTATCTCAAACTCTTCCTTCTTCGGCGCG  215
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct  333  TCAAACCCTAGTTCGGTCGTGATCAACCCTCCTATCTCCAACTCTTCCTTCTTCGGATCG  392

Query  216  GTCACTGTGATCGACAACCGATTAACTACGGAGGTGGCGGTGAATTCGACTTTAGTGGGA  275
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  393  GTCACTGTGATCGATAACCGATTAACTACGGAGGTCGCGGTGAATTCGACTTTAGTGGGA  452

Query  276  CAGGCGCAAGGGATCTACGCTGCTACTGGTCAACGTGATTTGTCTGCGCTTATGGTGATG  335
            || ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct  453  CAAGCGCAAGGGATCTACGCTGCTACTGGTCAACGTGATGCATCTGCGCTTATGGTGATG  512

Query  336  AACTTCGCGTTCAAGACAGGGAAGTATAACGGAAGTACGATCACGATTCTTGGTCGGAAC  395
            ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct  513  AACTTTGCGTTCAAGACAGGGAAGTATAACGGAAGTTCGATCGCGATTCTTGGCCGGAAC  572

Query  396  GCTGTGTTGACCAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTC  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  573  GCTGTGTTGACCAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTT  632

Query  456  GCTAGAGGTTATGTCGAAGCTCGTACCATGTGGTTTGATCTAAAGTCAGGAGATGCTACT  515
            ||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct  633  GCTAGAGGTTATGTCGAGGCTCGGACCATGTGGTTTGATCAAAAGTCAGGAGATGCTACT  692

Query  516  GTGGAGTACAGCTGTTATGTCTTGCATTATTGATGATAGTGATGAATTATTATG  569
            || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  693  GTTGAGTACAGCTGTTATGTCTTGCATTATTGATGATAGTGATGAATTATTATG  746



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27478078409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5