BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929119
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11810.1 | Symbols: | F-box associated ubiquitination effec... 206 6e-52
AT3G49520.1 | Symbols: | F-box and associated interaction doma... 86.1 8e-16
AT3G17480.1 | Symbols: | F-box and associated interaction doma... 75.0 2e-12
> AT1G11810.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:3989763-3991066 FORWARD LENGTH=1304
Length=1304
Score = 206 bits (111), Expect = 6e-52
Identities = 318/412 (77%), Gaps = 38/412 (9%)
Strand=Plus/Plus
Query 276 GATGA-TTTCATTGATCA-ATCTGTCAAGGAAGTGAGTGAACTTT-ACGAATTCTCGATA 332
||||| ||| |||| || ||| || || |||| |||| | ||| | | |||| |||||
Sbjct 226 GATGACTTT-GTTGA-CACATCAGTGAATCAAGTAAGTGCA-TTTGATGGATTCGCGATA 282
Query 333 TCTCAAATCTTTCACTGCGACGGCTTGTTGCTTTGCGTCTTCAATGA-CAC--CAGCAGC 389
|||||| ||||||||||||||||||| ||| ||||| ||| |||| | ||| ||||| |
Sbjct 283 TCTCAACTCTTTCACTGCGACGGCTTATTGTTTTGCATCTCCAATAACCACTACAGCAAC 342
Query 390 AAGACGCTCATGGTGTGTAACATGTACTTGGGGCAAACTAGGAGGGTT-AAAGCCCGTCA 448
| ||||||||||| |||||||||||||||||| |||||||| | || ||| |||| |
Sbjct 343 TACACGCTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGATTCAAA-ACCGT-A 400
Query 449 -ATTGTTCGACAGATTCTCTA-AATCAGGTG-T-TTATGCTTTTGGATACGATGATAGC- 503
|||||||| || || || | || | || | |||||||| |||| ||||||||
Sbjct 401 GCTTGTTCGAGAG-TTATC-AGAA-CTTTTGCTCGTATGCTTTCGGAT---ATGATAGCA 454
Query 504 GAAGAAAACCGTAACCACAAAATCTTGAGAAACGAAA-CTAATGGTGGTGGTTATGAGAT 562
| | |||||||||||||||||||||||||||| || || | |||||||||||| ||
Sbjct 455 GCA-AAAACCGTAACCACAAAATCTTGAGAAAT-AATTCTGTTTCTGGTGGTTATGAAAT 512
Query 563 CTACGATTTTAGA-TCCGATTCATGGAG-GCTTCTTGATGTCGTTCCCGACGGAGATAC- 619
|||| | |||| | ||||||||||||| | | ||| |||| | || ||| | | || |
Sbjct 513 CTAC-AGTTTAAAATCCGATTCATGGAAAGAT-CTTAATGTTGATCTCGA-GAA-AT-CT 567
Query 620 A-A-AT-TTTGGTGAAAAACTAAGCTTGTCTTTGAAGGGAAATGCTTACTTT 668
| | || ||||| || | |||| ||||||||||||||||||||||||||
Sbjct 568 ATACATCTTTGGCGACTAGG-AAGCGTGTCTTTGAAGGGAAATGCTTACTTT 618
> AT3G49520.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18359584-18360750 FORWARD LENGTH=1167
Length=1167
Score = 86.1 bits (46), Expect = 8e-16
Identities = 380/527 (72%), Gaps = 80/527 (15%)
Strand=Plus/Plus
Query 643 TGTCTTTGAAGGGAAATGCTTACTTTTTTGTTAC-AGAGGAATATGAT-GAGACACTTGT 700
|||||||||||||||||||||||||||| | | | ||||| | | || ||| || |
Sbjct 587 TGTCTTTGAAGGGAAATGCTTACTTTTTCGAT-CGAGAGGTA-ACGACAGAGGCA---GA 641
Query 701 AGTGGAGGG-AGAAACACT-GT--ATT-CAAGGGAGAGTCGACTTATGTTACTCTGTTTT 755
||||| || |||| ||| || || || || | | || |||| |||| |||||||
Sbjct 642 AGTGG-GGACAGAAG-ACTTGTTGATAACA-GGCATTGAAGA-TTAT-TTACGCTGTTTT 696
Query 756 GATTTCACTAGTGAGACATTTGGACAGC-TTCTGACTCTGCCGTTTCACTCTCTTGG-TG 813
|||||||| | |||| |||||||| || || || |||| |||||| | || ||| |
Sbjct 697 GATTTCACAACCGAGAGATTTGGACCGCGTT-TGCCTCTTCCGTTT-A-TC-CTTCCCTC 752
Query 814 ATC-TAGTTGTTGATAGTAGTGTGGAGAGTTGGGCTCTATCTTGTGTTAGAGATGAGAAG 872
|| ||||| |||| | || | | | || |||||||||| | ||||||||| |||
Sbjct 753 -TCCTAGTT-TTGA-A-TA-T-T------T-GG-CTCTATCTTGGGCTAGAGATGATAAG 798
Query 873 CTCGCTGTGTTGTTT--CAAC-ACTATA-A---GACTATCA-AGA--TTTGGACTACGAC 922
||||||||||| | | | || || | | | ||| |||| ||| |||||| | ||||
Sbjct 799 CTCGCTGTGTTATATAGCCACTACGACACATTTGAC-ATCATAGAGATTTGGATTTCGAC 857
Query 923 TGAGATCGAGCCCAATGCGGTGTCCTGGGATG-AGTTTTTGGAA-GTGGACT-TGACGA- 978
| |||| |||||||||||||| || ||| | | | ||||| ||| ||||| | || | |
Sbjct 858 TAAGATTGAGCCCAATGCGGTTTCGTGG-A-GCACTTTTTTGAAAGTGGA-TATGTC-AC 913
Query 979 TGTTTGGTGGTGTTC-CGGATGATTTT---A---GA---G--C-TGGGAGCTTCTTTCTT 1025
| | |||| || ||||||||||| | || | | | ||||| ||| |
Sbjct 914 TAATCAATGGT-TTAACGGATGATTTTTTGATTAGATTTGAACCTAAAAGCTTTTTTATC 972
Query 1026 GACGAGGAGAAGGAAGTCGCTGTAGTTTTCGAT-C-AA-GAGACCA-AGA--TGGATCGC 1079
|||||||||||| ||||||||||| |||| ||| | || | ||| | ||| || ||||
Sbjct 973 GACGAGGAGAAGAAAGTCGCTGTACTTTTTGATACTAAAGTGAC-AGAGACCTG--TCGC 1029
Query 1080 AACCAAACAGCTTACGTCATTGGAAAGGGTGGATACTTCAAATCTGT 1126
|||||| |||||| || ||||| | | ||||||||||||||||||
Sbjct 1030 TACCAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATCTGT 1076
> AT3G17480.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5983199-5984320 FORWARD LENGTH=1122
Length=1122
Score = 75.0 bits (40), Expect = 2e-12
Identities = 67/79 (85%), Gaps = 6/79 (8%)
Strand=Plus/Plus
Query 62 TTTGGTAGAGGATATACTCTCTAGGGTTCCGGTGACATCTCTCAGAGCAAT-ACGAT-TA 119
|||||||||||||||||||||||||||||| | ||||||||| || | || ||||| ||
Sbjct 42 TTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATCTCT-AGTTCGATTACGATCTA 100
Query 120 ACTTGCACAACC-TGGAAC 137
|||||| ||| ||||||
Sbjct 101 -CTTGCA-AACAGTGGAAC 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5