BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929120
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 876 0.0
AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 311 1e-83
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 183 3e-45
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 178 1e-43
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 82.4 1e-14
AT3G13825.1 | Symbols: | pseudogene of F-box family protein | ... 76.8 5e-13
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 71.3 2e-11
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 67.6 3e-10
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 876 bits (474), Expect = 0.0
Identities = 890/1083 (82%), Gaps = 60/1083 (6%)
Strand=Plus/Plus
Query 21 ATGACGACAATAGCCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGAGTTCCA 80
|||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60
Query 81 CTGACATCTTTGAGAGCAACACGATCTACTTGCAAAAAGTGGAACGCTTTATCGAAAAAT 140
||||||||| |||| || | ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120
Query 141 CAGATTTTTGGTAGAAAAGCAACAGCAGCA-AGGAAGCAGTTTATGGGGTTTATGATGAA 199
||||||| |||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 121 CAGATTTGTGGTAGAAAAGCAACAGCAGCAGAG-AATAAGTTTCTGGGGTTTATGATGAA 179
Query 200 GGATTCAAGGCTTTGTTCAATTGAA-TTCGATCTCCAAGGAATCCGAAATGAAGACGGCA 258
|||||||||| |||||||||| ||| || ||||||||||||||| |||| || |||||
Sbjct 180 GGATTCAAGGGTTTGTTCAAT-GAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238
Query 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAGTATACTTAACCAAGTCGAGGTATCT-AAT 317
| || ||||| |||||||||||||||||||||| ||| | ||| ||||||| ||| ||
Sbjct 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAA- 297
Query 318 GTCTTTCACTGCGACGGTTTATTGCTATGCGTCCTTGAGGACAATTCGAGG-CTCTTGGT 376
|| |||||||| ||||||||| | |||||| || || ||||||| | ||| ||||||||
Sbjct 298 GTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACAC-AGGGCTCTTGGT 356
Query 377 ATGGAATCCGTATTTGGGGCAAACCAGGTGGATCCAACCCAGAAACACTTTC-A--T-GA 432
|||||| || |||||||||||||| ||||||||||| || ||||||| || | | | ||
Sbjct 357 ATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGA 416
Query 433 -G---GC-ATGA-CA-GG-TATGACAAGAACCGTAACCACAAAATCTTGAGGATTTTCTA 484
| | ||| | || ||||| || ||||||||||||||||| |||||||||||| |
Sbjct 417 AGATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGA 476
Query 485 TGTG-ATC---G-A-C--C-GCGTTTCTGGTTTCGAAATCTACGATTTTAGCTCTAATTC 535
| || ||| | | | | |||||| ||| | |||| ||||||||||||||||||||||
Sbjct 477 TTTGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTC 536
Query 536 ATGGAAGGTTCTTCATGTCACTCCTGACTGGGAAATA-ATGCCTCCTCGGCGTGGTGTGT 594
||||||||||||| |||||| |||||| ||||| ||| | | ||| | ||||| | ||
Sbjct 537 ATGGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACA-GTCTCATTTTCGTGGCGCGT 595
Query 595 CTTTGAA-GGGAAATACTTACTTTCCTGCTCAAAAGAGAACAAT-AGTGGGTGTAGGAAC 652
||||||| ||||| | |||| |||||||| ||||||| || || |||||| |||||
Sbjct 596 CTTTGAAAGGGAA-TGCTTATTTTCCTGCGCAAAAGA-AAGAAACAGTGGG---AGGAAT 650
Query 653 AAGAAGGATAATAAAGAGTGAAGATTTTTTAGTCTGCTTT-GATTTTACAAGAGAGAGAT 711
|| | | | |||||| | ||||||| || || | || ||| ||||||||||| |||||||
Sbjct 651 AA-A-G-ACAATAAATATTGAAGATGTTCTACTTTG-TTTCGATTTTACAAGGGAGAGAT 706
Query 712 TTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAATGTTAGACTTTTT-GTGTCTCTA 770
||||||||| ||| || |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 707 TTGGACCGCCTCTGCCACTGCCGTTTCACTCTTACAATGC-AGACTTTTTTGTGTCTCTA 765
Query 771 TCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGG 830
|||||||||| || |||||||||||||||||||||||||||| || ||| ||| |
Sbjct 766 GCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGA-G-- 822
Query 831 ACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTT 890
||| ||||| ||||||||||| ||||||||||||||||| | || || ||||||| ||||
Sbjct 823 ACAATCGAGATTTGTGTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTT 882
Query 891 TTGA-AACAAGTC-ATTGGTTTTACGGTTAA-ACCTTGTGCTGGGAGTTTTTTCATCGAC 947
|||| ||| ||| | ||||||| ||||| | || || | ||||||| |||||||| ||
Sbjct 883 TTGATAAC--GTCCACTGGTTTTCCGGTTGACACTTTTT-CTGGGAGCTTTTTCATTGAT 939
Query 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGAT-GTATATAAAAAGG-TCAAGGAA- 1004
| ||||||||||| || |||||||| ||| ||||| | ||||||| | | | | |
Sbjct 940 GAGGAGAAGAAAGTTGCTGTGGTTTTTGATTTAGATAG-ATATAAACCGACTGA-G-ACC 996
Query 1005 TGTCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATC 1064
|||||||| |||| || ||| || ||||||||||||| ||||||||||||||| || ||
Sbjct 997 TGTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGTCAACATG 1056
Query 1065 GGA 1067
|||
Sbjct 1057 GGA 1059
> AT3G15935.1 | Symbols: | pseudogene, hypothetical protein |
chr3:5390599-5391763 REVERSE LENGTH=1165
Length=1165
Score = 311 bits (168), Expect = 1e-83
Identities = 837/1138 (74%), Gaps = 133/1138 (12%)
Strand=Plus/Plus
Query 20 AATGACGACAATAGCCGATCTTCCAGGC-GATTTGGTAGAG-GAGATACTCTCTAGAGTT 77
||||||||| || ||||| || || | | ||||| | | |||||||| || || |||
Sbjct 19 AATGACGACGATTTCCGATTTTTCA-CCTTAATTGGTCG-GCGAGATACTGTCGAGGGTT 76
Query 78 CC-ACTGACATCTTTGAGAGCAACACGATCTACTTGCAAAAAGTGGAACGCTTTATCGAA 136
|| | |||||||||||| |||| || | |||||||||||||||||||| |||||||||
Sbjct 77 CCGA-TGACATCTTTGAAAGCAGTGCGGTGTACTTGCAAAAAGTGGAACGTTTTATCGAA 135
Query 137 AAATCA-GATTTTTGGTAGAAAAGCAACAGCAGCAAGGAAGCAGTTTATGGGGTTTATGA 195
| || | |||| || | | | |||||||||||| ||||| | || || ||||
Sbjct 136 AGAT-AGGATTATT--T------G---C-GCAGCAAGGAAGGAGTTTCTAGGATTCATGA 182
Query 196 TGAAGGATTCAAG-GCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAATGAAGA 253
||| |||||| || | | |||| | || |||||||||||||||| ||||| || || |
Sbjct 183 TGATGGATTCTAGAG-TCTGTTGGA-TGAAATTCGATCTCCAAGGGATCCGCAA-CAACA 239
Query 254 CGGCAACTTCG-T-TGATCCATCTATAAAGCAAGTAAGT-ATACTTAACCAAG-TCGAGG 309
| | ||| | | |||| | ||||| |||||| || | |||| | | || | ||||
Sbjct 240 C--CTTGGTCGATAT-ATCCTTGTATAAGGCAAGTTGGTCA-ACTTGATC-AGATGGAGG 294
Query 310 TATCTAATGTCTTTCACTGCGACGGTTTATTGCTATGCGTCCTTG-AGGACAATTCGAGG 368
||||||| || ||||||||||||| || ||| ||||||| || |||| || |||| |
Sbjct 295 TATCTAAACTC-TTCACTGCGACGGCTTGTTGTTATGCGT-GGTGAAGGATAACTCGATG 352
Query 369 CTCTTGGTATGGAATCCGTATTTGGGGCAAACCAGGT--GGATCCAACCCAGAAACACTT 426
|||||||| |||||||| ||||| || |||||| || |||||||||| ||||||| ||
Sbjct 353 CTCTTGGTGTGGAATCCCTATTTAGGTCAAACC--GTACGGATCCAACCGAGAAACAGTT 410
Query 427 T---C--A-T-G--AGGCATG-AC-AGG-TATGACAAGAACCGTAACCACAAAATCTTGA 474
| | | | | ||| ||| | || || |||||||||||||||||||| ||| |||
Sbjct 411 TCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAGAACCGTAACCACAAGATCCTGA 470
Query 475 GGATT-T---T-CT-A--T-G-TGATC---GACCGCG-TTTCTGGTTTCGAAATCTACGA 520
|| || | | | | | | || || || | || |||| ||| | |||||||| ||
Sbjct 471 GGTTTGTGGATGATCACCTCGCTG-TCGGAGAACACGTTTTCGGGTAT-GAAATCTATGA 528
Query 521 TTTTAGCTCTAATTCATGGAAGGTTCTTC-ATGTCACTCCTGACTGGGAAATA-ATG-CC 577
||||||||||| ||||||| ||||| || |||||||||| |||||||| ||| | |
Sbjct 529 TTTTAGCTCTAGCTCATGGAGGGTTC-TCGATGTCACTCCCGACTGGGATATACA-GTTT 586
Query 578 T-CC-TCGGCGTGGTGTGTCTTTGAAGGGAAATACTTAC-TTTCCTGCTCAAAAGAGAAC 634
| || | ||| || || |||||||| |||||||| ||| ||| | |||| |||||||
Sbjct 587 TACCAAC-GCG-GG-GTATCTTTGAATGGAAATACCTACTTTTTC-GCTC--AAGAGAA- 639
Query 635 AATAGTGGGTGTAGGAACAAGAAGGA-TAATAAAGAG--TGAAGATTTTTTAGTCTGCTT 691
|| | | ||| || | | || | || ||||| ||||||||||||| ||| ||
Sbjct 640 GAT--T-ACAG-AGG-AC--GGA-GAGT-ATGAAGAGTTTGAAGATTTTTTACTCTATTT 690
Query 692 TGATTT-TACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAATG 750
|||||| | | | |||||| |||| ||||| ||| |||||||| || |||| ||| |
Sbjct 691 TGATTTCT-CCACAGAGAGGTTTGAACCGCGTCTTCCTCTGCCATTCCACTTTTA-TGTT 748
Query 751 TTAGACTTTTTGTGTCTCTATCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAAC 810
||||| |||||||| ||| |||||||||| |||||||| || ||||||||||| |
Sbjct 749 TTAGA--AACCGTGTCTCTCTCTAGTGTTAGAGATGAGCAGCTTGCCGTGTTATATCAGC 806
Query 811 GCTTGGACACATATGATGGGA-CAGTCGAGT-TTTGTG-TTA-CAGATAAGATTGATCCC 866
||||||| |||| || || | | || | | || | ||| || ||||||||| ||
Sbjct 807 GCTTGGATTCATACGA---GATC-TTGGA-TATCTG-GCTTACCA-CTAAGATTGAGCCT 859
Query 867 AATGCTGTGTCTTGGAGCATGTTTTTGAAAC-----A--AG-----TCATTGGTTTTACG 914
| ||| || || ||||||||||||||||||| | || ||| ||||||| |
Sbjct 860 AGTGCGGTTTCGTGGAGCATGTTTTTGAAACTGGATATGAGACCACTCACTGGTTTT-CA 918
Query 915 GTTAAACCTTG-TGCTGGGAGTTTTTTCATCGACCAAGAGAAGAAAGTCGCCGTGGTTTT 973
||| | | | | ||| || || ||||||||| | |||||||||||||| || |||||
Sbjct 919 GTTTATGGTCGACGGTGGAAGCTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTCGTTTT 978
Query 974 CGATATAGA-TGTATATAAAAAGGTCAAG-GA-ATGTCGCTATCAAACAGCTTACATCAT 1030
||| || | | ||||| | | | | || ||||||| |||||||||||||||||
Sbjct 979 TGATCTA-ACCAAACATAAACA-GAC-CGTGACCCGTCGCTACCAAACAGCTTACATCAT 1035
Query 1031 TGGACAAGATGGATACTTCAAATCTGTGAATATCGGACAAGCTCGGGATCTCGGGAGA 1088
|||||||||||||||||||||| |||| | ||||| |||||| | ||||||| |||
Sbjct 1036 TGGACAAGATGGATACTTCAAACCTGTTAGCCTCGGAGAAGCTCCGTATCTCGG-AGA 1092
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 183 bits (99), Expect = 3e-45
Identities = 337/444 (76%), Gaps = 48/444 (11%)
Strand=Plus/Plus
Query 677 TTTTT-TAGTCTGCTTTGATTTTACAAG-AGAGAGATTTGGACCGCTTCTCCCTCTGCCG 734
||||| || |||| ||||||||||| || ||||||||||||||||| ||| ||||| |||
Sbjct 275 TTTTTCTACTCTGTTTTGATTTTAC-AGCAGAGAGATTTGGACCGCGTCTTCCTCTTCCG 333
Query 735 TTTCACTCT--T-ACAA-TGT--T-A-G-ACTTTTTGTGTCTCTA-TCTTGTGTTAGAGA 784
||||||||| | | || | | | | | | ||||||||||| || ||||| | |||
Sbjct 334 TTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTCAAAGA 392
Query 785 CGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGGACAGTCGAGTTTTG 844
|||||||||||||||||| ||||| ||| | | || ||| | | | ||| ||||
Sbjct 393 GGAGCAGCTCGCTGTGTTACATCAAAACTTTG---C-TA-GAT--G-C-TTGGAGATTTG 443
Query 845 TG-TTA-CAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTTTTG-AA----AC 897
| ||| || ||||| || || | ||| ||||||||||||||||||||| || |
Sbjct 444 -GATTACCA-CCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGAT 501
Query 898 A--AG-----TCATTGGTTTTACGGT-TAAACCTTG-TGCTGGGAGTTT-TTTCATCGAC 947
| || ||| ||| |||| || | | ||| ||||||||||| ||| | |||
Sbjct 502 ATGAGACCACTCACTGGCTTTA-AGTGT-CATGTTGAAGCTGGGAGTTTCTTT-GTTGAC 558
Query 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGATGTATATAAAAAGGTCAAGGA-ATG 1006
| ||||||||||||||| ||||||||||| |||| | | ||||||| | | || ||
Sbjct 559 GAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAAAAGACCGA-GACTTG 617
Query 1007 TCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCGG 1066
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 618 CCGCTACCAGACAGCTCACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCCG 677
Query 1067 ACAAGCTCGGGATCTCGGGAGAAC 1090
| |||| | | ||||||||| |||
Sbjct 678 AGAAGCACAGAATCTCGGGA-AAC 700
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 178 bits (96), Expect = 1e-43
Identities = 553/757 (73%), Gaps = 97/757 (13%)
Strand=Plus/Plus
Query 48 GATTTGGTAGAGGAGATACTCTCTAGAGTTCCACTG-ACATCT-TTGAGAGCAACACGAT 105
|||||| ||||||||||| | ||||| ||||| | || ||| | | ||||| |||||
Sbjct 28 GATTTGTTAGAGGAGATATTGTCTAGGGTTCC-GAGAACTTCTCTAG-GAGCAGTACGAT 85
Query 106 CTACTTGCAAAAAGTGGAACGCTTTA-TCGAAAAATCAGATTTTTGGTAGAAAAGCA-AC 163
| ||||||||| ||||||| ||||| || ||| ||| || || | | | |||||| |
Sbjct 86 CCACTTGCAAACGGTGGAACACTTTATTC-AAAGATC-GAATTCT-AT-GTAAAGCAGA- 140
Query 164 AGCAGCAAGGAAGCAGTTTATGGGGTTTATGATGAAGGA-T-TCAAGGCTTTGTTCAATT 221
|| | ||||| | ||| || | |||| || |||||| | | | || ||||||||||| |
Sbjct 141 AGAAACAAGGGATCAG-TT-T-CGGTTCATAATGAAGAAGTAT-AA-GCTTTGTTCAA-T 194
Query 222 GA-ATTCGATCTCCAA-GGAATCC-GAAATGAAGA---CGG---C-AACTTCGTTGATCC 271
|| || ||||| ||| |||| || ||| ||||| || | || ||||| |||||
Sbjct 195 GAGGTTTGATCT-CAACGGAA-CCTTAAACGAAGATGGAGGTACCGAA-TTCGTGGATCC 251
Query 272 ATCTATAAAGCAAG-TAAGT-A--TACTTAACCAAGTCGAGGTATCTAATGTCTTTCACT 327
|||||||||| || || || | | |||| |||||| || ||||||| || ||||| |
Sbjct 252 ATCTATAAAG-GAGTTAGGTCATTTTTTTAATCAAGTCAAGATATCTAAAGTTTTTCAAT 310
Query 328 GCGACGGTTTATTGCTATGCGT--CC-TTGAGGAC-A-ATTCGAGGCTCTTGGTATGGAA 382
||||||| |||||| | ||||| || |||||| | ||| |||||| ||||||||||
Sbjct 311 GCGACGGGTTATTGTTGTGCGTGACCAAAGAGGACAACATT--AGGCTCGTGGTATGGAA 368
Query 383 TCCGTATTTGGGGCAAACCAGGTGGATCCAACCCAGAAACACT--TT-----C-A-T-G- 431
||| |||||||| |||| |||||||||| || || | |||||| || | | | |
Sbjct 369 TCCTTATTTGGGTCAAATCAGGTGGATCGAATCCGGTAACACTAATTACCGCCTATTCGA 428
Query 432 -AGGCATGAC-A--GG-TATGACAAGAACCGTAACCACAAAATCTTGA-------GG-AT 478
||| ||| | | || || ||||| |||||||| ||||||||||||| || ||
Sbjct 429 CAGGTATG-CTATCGGATACGACAATAACCGTAAACACAAAATCTTGAGGTTTCTGGAAT 487
Query 479 -TTTCTA-TGTGATC--G-ACCGC-G-TTTC-TG-GTTTCGAAATCTACGATTTTAGCTC 529
|| | | | | | | | | | | | |||| || | | |||||||||||||||||||||
Sbjct 488 ATTACAACT-TTAACATGAAGCACAGATTTCTTGAG-TACGAAATCTACGATTTTAGCTC 545
Query 530 TAATTCATGGAAGGTTCTTCATGTCACTCCT-GACTGGGAAATA-ATGCCTCCTCGGCGT 587
||||||||||| ||||||| || || |||| | ||||||||| | | || || |||
Sbjct 546 TAATTCATGGAGGGTTCTTGATATCGCTCCCCGT-TGGGAAATAGA-GTCTTATCAACGT 603
Query 588 GGTGTGTCTTTGAAGGGAAATACTTACTTTCCTGCTCAAAAGAGAACAATAGTGGGTGTA 647
|| | ||||||||| ||||| ||||||||| ||| ||| || || ||||| | |
Sbjct 604 GGAGCGTCTTTGAAAGGAAACACTTACTTTATTGC-CAAG-GAAAA-AATAGAA--T--A 656
Query 648 GGAACAAGAAGGATAATAA--AGAGT-GA-AGATTTTTTAGTCTGCTTTGATTTTACAA- 702
||| | || ||| | | |||| | |||| |||| |||| ||||||||||| |
Sbjct 657 CGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGAC 716
Query 703 GAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCA 739
| ||||| ||||||| | |||| ||||||||||||||
Sbjct 717 G-GAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCA 752
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 82.4 bits (44), Expect = 1e-14
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 685 TCTGCTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTT 737
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1169 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGCCATTT 1221
> AT3G13825.1 | Symbols: | pseudogene of F-box family protein
| chr3:4552524-4553382 FORWARD LENGTH=859
Length=859
Score = 76.8 bits (41), Expect = 5e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 761 TGTGTCTCTATCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAAC 810
|||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 682 TGTGACTCTATCTTGTATCAGAGACGAGCAGCTCGCTGTGTTATATCAAC 731
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 71.3 bits (38), Expect = 2e-11
Identities = 45/48 (94%), Gaps = 2/48 (4%)
Strand=Plus/Plus
Query 301 AAGTCGAGGTATCT-AATGTCTTTCACTGCGACGGTTTATTGCTATGC 347
||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 293 AAGTCGATGTATCTCAA-GTCTTTCACTGCGACGGTTTATTGCTATGC 339
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 67.6 bits (36), Expect = 3e-10
Identities = 156/210 (74%), Gaps = 24/210 (11%)
Strand=Plus/Plus
Query 690 TTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAAT 749
||||||||||||||||||||||||||||||| ||| ||| |||| || || | | | |
Sbjct 670 TTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCCCTT-CA-TG--A-A-T 723
Query 750 GTTAGACTTTTTGTGTCTCTATCTTGTGTT-AGAGACGAGCAGCTCGCTG-TGTTATATC 807
|| || | | |||||||||||| ||| | | ||| ||| |||| || | |||||| |
Sbjct 724 -TTGGA-TGAT-GTGTCTCTATCT-GTGGTCAAAGAAGAGAAGCTTGC-GATGTTAT-TA 777
Query 808 AA-CGCTTGGACACATATGATGGGACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCC 866
|| || | ||| |||| ||| || | ||| |||| || || || |||||||| |||
Sbjct 778 AAGCGGTGGGATACATGTGA-GGT---G--GAGATTTGGGTGACGGACAAGATTGAGCCC 831
Query 867 AATGCTGTGTCTTGGAGCATGTTTTTGAAA 896
||| ||| | ||||||| ||| || |||
Sbjct 832 GATG-TGT--CGTGGAGCAAGTTCTTAAAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5