BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929122
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 1744 0.0
AT3G13624.1 | Symbols: | pseudogene, hypothetical protein | ch... 416 2e-115
AT1G11806.1 | Symbols: | pseudogene, hypothetical protein, lik... 95.3 1e-18
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 76.8 5e-13
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 1744 bits (944), Expect = 0.0
Identities = 1137/1228 (93%), Gaps = 21/1228 (2%)
Strand=Plus/Plus
Query 21 ATGACGACAATGGGGGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCAAGGGTTCCG 80
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60
Query 81 CTGACATCTCTGAGGGCTATACGATCCACTTGCAAAAAGTGGAACTCTTTATCGAAAAAT 140
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120
Query 141 CAGATTTTTGGTAAAAAAGCAACAGCAGCAAG-GAAGCAGTTTATGGGGTTTATGATGAA 199
||||||| ||||| ||||||||||||||| || ||| ||||| ||||||||||||||||
Sbjct 121 CAGATTTGTGGTAGAAAAGCAACAGCAGC-AGAGAATAAGTTTCTGGGGTTTATGATGAA 179
Query 200 GGATTCAAGGCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAACGACGACGGCA 258
|||||||||| ||||||||| || |||| ||||||||||||||| |||||||||||||
Sbjct 180 GGATTCAAGGGTTTGTTCAA-TGAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238
Query 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAATAAACTCGATCAATTCGAGGTCTCTCAAG 318
| || ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAAG 298
Query 319 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 358
Query 379 GGAACCCTTATTTGGGGCAAACTAGGTCGATCCAACCGAGAAACAATTTCCAGATGGAAG 438
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||
Sbjct 359 GGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGAAG 418
Query 439 ACAGGTATGCTCTTGGATATGATAACAACCGTAACTACAAAATTTTGAGGATTTTCGATT 498
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 419 ATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGATT 478
Query 499 TGTATCCAAGCAGAAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 558
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 538
Query 559 GGAAGCTTCTTGATGTCAATCCCGGGTGGGATATACAGTCTCATCATCGTGGCGTGTCTT 618
||||| |||||||||||| ||| | ||||||||||||||||||| |||||||| |||||
Sbjct 539 GGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTT 598
Query 619 TGAAAGGGAATACTTATTTTCCTGCGCAAAAGaaaaaaaCAGAGGGAGGAATAAAGACAA 678
||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 599 TGAAAGGGAATGCTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAA 658
Query 679 CTAA-TATTGAAGATGTTCTACTTTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCCT 737
||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 659 -TAAATATTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCT 717
Query 738 CTGCCACTGCCGTTTCACTCTTACAATGCAGAAATTTTTGTCTCTCTATCTTGTGTTAGG 797
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 718 CTGCCACTGCCGTTTCACTCTTACAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGG 777
Query 798 GAAGAGCAGCTCGCTATGTTATATCAACGCTGGGAGGCATGTGAGACAATCGAGATTTGT 857
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 778 GAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGAGACAATCGAGATTTGT 837
Query 858 GTTACAAATAAGATTGATCCCAATACGGTTTCATGGAGCAAGTTTTTGATAACGTTCACT 917
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 838 GTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTTTTGATAACGTCCACT 897
Query 918 GGCTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 977
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGTTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 957
Query 978 GTGGTTTTTGATCTAGATAGATATAAACCGACCGAGACCTGTCGCTACCAAATAGCTCAT 1037
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 958 GTGGTTTTTGATTTAGATAGATATAAACCGACTGAGACCTGTCGCTACCAAATAGTTTAT 1017
Query 1038 ATTATTGGACAAGATGAATACTTCAAATCTGTGAATATCGGAGTTGCGCCAAATCTCGGG 1097
|||||||||||||||||||||||||||||||| || || |||||||| |||||| ||| |
Sbjct 1018 ATTATTGGACAAGATGAATACTTCAAATCTGTCAACATGGGAGTTGCCCCAAATATCGCG 1077
Query 1098 ATATCGTACAAAGTTGGATTTACTCCGACGGCATACTGTGTTCCACTTGTGTGCTCTTCA 1157
| | | || | | | || | | | | ||||||||||||||||||||||||||
Sbjct 1078 A-A--GAAC----TCG--T--AC-CA-A-G-CTTACTGTGTTCCACTTGTGTGCTCTTCT 1122
Query 1158 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCAGGCAAAAGGAAAGAAAGT 1217
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1123 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCGGGCAAAAGGAAAGAAAGT 1182
Query 1218 AGTTAGTTCCATTTACAGTACTTTTTAT 1245
| |||||||||||||| ||||||||||
Sbjct 1183 AACTAGTTCCATTTACACTACTTTTTAT 1210
> AT3G13624.1 | Symbols: | pseudogene, hypothetical protein |
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792
Score = 416 bits (225), Expect = 2e-115
Identities = 832/1111 (75%), Gaps = 97/1111 (9%)
Strand=Plus/Plus
Query 21 ATGACGACAATGGGGGATCTTCCAG-GCGATTTGGTAGAGGAGATACTCTCAAGGGTTCC 79
||||||||||| |||||||| | | ||| ||||||||||||||||| | ||||||||
Sbjct 1 ATGACGACAATTTCTGATCTTCCTGAG-GATGTGGTAGAGGAGATACTCCCTAGGGTTCC 59
Query 80 GCTGACATCTCTGAGGGCTA-TACGATCCACTTGCAAAAAGTGGAACT-CTTTATCGAAA 137
||||||||||||| || | | ||||||| |||||||| |||||| | |||| || ||
Sbjct 60 ATTGACATCTCTGAGCGC-AGTGCGATCCATTTGCAAAACGTGGAA-TACTTTGTCCAAG 117
Query 138 AATCAGAT-TT-TTGGTAAAAAAGCAACAGCAGCAAGGAAGCAGTTTATGGGGTTTATGA 195
|||| | | || || || |||| | |||| || ||| |||||| |||| || || |
Sbjct 118 AATC-G-TGTTCTTTGT---AAAG---CGGCAGTAAAGAAACAGTTTTTGGGATTCATTA 169
Query 196 TGAAGGATTCA-AGGCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAACGA-CG 252
||| ||||| | ||| |||| || | || ||||| |||||| ||| || |||| |
Sbjct 170 TGATGGATT-ATAGGGTTTGCTCCA-TGAAATTCCATCTCC---GAA-ACG--ACGAGGG 221
Query 253 ACGGCA-ACTTCG-T--TGATCCATCTATAAAGCAAGTAAATAAACTCGATCAATTCGAG 308
| || | |||| | | ||||| |||||||||||||||| || ||| |||||| |||||
Sbjct 222 A-GG-AGACTTGGTTGATGATCTATCTATAAAGCAAGTAGGTATACTTGATCAAATCGAG 279
Query 309 GTCTCTCAAGTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGG 368
| ||| |||| || || |||||||| ||| |||| | | ||| |||||||||| || |
Sbjct 280 ATATCTGAAGTCTTACATTGTGACGGCTTACTCCTTTTCGTCACTAAGGACAACTCAAGT 339
Query 369 CTCT-TGGTATGGAA-CCCTTATTTGGGGCAAACTAGGTCGATCCAACCGAGAAACAATT 426
|| | |||||||||| ||| |||||||||||||| |||| ||| ||||| || |||||||
Sbjct 340 CT-TGTGGTATGGAATCCC-TATTTGGGGCAAACGAGGTTGATACAACCCAGTAACAATT 397
Query 427 TCCAGATG-GAAGACAGGTATGCTCTTGGATATGATAACAACCGTAA-CTACAAAATTTT 484
|||| || |||| | |||||| | |||||||| || |||||||| || |||||| ||
Sbjct 398 TCCA-CTGTTCAGACCGCTATGCTATCGGATATGACAATAACCGTAACCT-CAAAATCTT 455
Query 485 GAGGATTTTCGATTTGTATCCAAGCAGAAACCGCGTTTTTGGGTACGAAGTCTACGATTT 544
||||| |||| | || || | | | || || | ||| || ||| ||||| ||||
Sbjct 456 GAGGAATTTC-A-GTG-AT-TATG--G-AA--GC---TCTGGTTATGAAATCTACAATTT 503
Query 545 TAGCTCTAATTCATGGAAG-CTTCTTGATGTCAATCCCGGGTGGGATATACAGTCTCATC 603
| | ||||||||||| ||| || ||||| ||| | ||| ||| ||||| |||| ||
Sbjct 504 TCGTTCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGGGTCTAATA 562
Query 604 ATCGTGGCGTGTCTTTGAAAGGG-AATACTTATTTTCCT-GCGCAAAAGaaaaaaaCAGA 661
| |||||||||||||| ||||| ||||| || || | || | || | |||| | |||
Sbjct 563 AACGTGGCGTGTCTTT-CAAGGGAAATACATA-CATCTTGGCTC-AAGGGAAAATA-AGA 618
Query 662 GGGAGGAATAAAG-ACAACTAATATTGAAGATGTTCTACT-TTGTTTTGATTTTACAAGC 719
| || || || | | || ||||| | | || |||| | | ||||||||||||| |
Sbjct 619 --GTGG-AT--AGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAA-C 671
Query 720 -GAGAGATTTGGACCGC-CTCTGCCA-CTGCCGTTTCACTCTTACAATGCAGAA-ATTTT 775
|||||||||||||||| | || || || |||||| || ||| || || || ||||
Sbjct 672 TGAGAGATTTGGACCGCGGT-TG-CAGCTTCCGTTTGGCTTTTATTATCCACAAGATTTG 729
Query 776 TGTCTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCT-ATGTTATATCAACGCTGGGA-G 833
| ||||| |||||||||| || ||||||||||||| | | ||| ||||| ||| ||| |
Sbjct 730 T-TCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TGGTATTACATCAAAGCT-GGATG 786
Query 834 GCATGT-GAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATACGGTTTCAT 891
| | | | || | | |||||||| | |||| ||||||||||||||| | || || |
Sbjct 787 GTTTCTGGCGA-ACTGGAGATTTG-GATTACGAATAAGATTGATCCCGGTGTTGTCTCGT 844
Query 892 GGAGCAAGTTTTTGATAACGTTCACTGGCTT-TCCG-GTTGA-CACT-TTTTCTGGGAGC 947
||| ||||||||||| | | || || | || | || || | | | |||||||
Sbjct 845 GGACCAAGTTTTTGAGATCCATCTCTTG-TTGT-CGAATT-AGTA-TCCAAGCTGGGAG- 899
Query 948 TTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGATCTAGATAG-ATATAAAC 1005
||| |||||| | |||||||| |||| ||||||||||| ||||| || | |||||||
Sbjct 900 TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGA-CGAATATAAAG 958
Query 1006 CGACCGAGACCTGTCGCTACCAAATAGCTCATATTATTGGACAAGATGAATACTTCAAAT 1065
|| ||||| |||||| |||||| |||| | ||||| ||||||||||||||||||||||
Sbjct 959 GGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTCAAAT 1018
Query 1066 CTGTGAATATCGGAGTTGCGCCAAATCTCGG 1096
|||||||||| || | || || ||||||||
Sbjct 1019 CTGTGAATATTGGGGAGGCTCCGAATCTCGG 1049
Score = 244 bits (132), Expect = 1e-63
Identities = 523/703 (74%), Gaps = 61/703 (9%)
Strand=Plus/Plus
Query 537 TACGATTTTAGCTCTAATTCATGGAAG-CTTCTTGATGTCAATCCCGGGTGGGATATACA 595
||| ||||| | ||||||||||| ||| || ||||| ||| | ||| ||| |||||
Sbjct 1118 TACAATTTTCGTTCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGG 1176
Query 596 GTCTCATCATCGTGGCGTGTCTTTGAAAGGG-AATACTTATTTTCCT-GCGCAAAAGaaa 653
|||| || | |||||||||||||| ||||| ||||| || || | || | || | ||
Sbjct 1177 GTCTAATAAACGTGGCGTGTCTTT-CAAGGGAAATACATA-CATCTTGGCTC-AAGGGAA 1233
Query 654 aaaaCAGAGGGAGGAATAAAG-ACAACTAATATTGAAGATGTTCTACT-TTGTTTTGATT 711
|| | ||| | || || || | | || ||||| | | || |||| | | |||||||
Sbjct 1234 AATA-AGA--GTGG-AT--AGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATT 1286
Query 712 TTACAAGC-GAGAGATTTGGACCGC-CTCTGCCA-CTGCCGTTTCACTCTTACAATGCAG 768
|||||| | |||||||||||||||| | || || || |||||| || ||| || ||
Sbjct 1287 TTACAA-CTGAGAGATTTGGACCGCGGT-TG-CAGCTTCCGTTTGGCTTTTATTATCCAC 1343
Query 769 AA-ATTTTTGTCTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCT-ATGTTATATCAACG 826
|| |||| | ||||| |||||||||| || ||||||||||||| | | ||| ||||| |
Sbjct 1344 AAGATTTGT-TCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TGGTATTACATCAAAG 1401
Query 827 CTGGGA-GGCATGT-GAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATAC 883
|| ||| || | | | || | | |||||||| | |||| ||||||||||||||| |
Sbjct 1402 CT-GGATGGTTTCTGGCGA-ACTGGAGATTTG-GATTACGAATAAGATTGATCCCGGTGT 1458
Query 884 GGTTTCATGGAGCAAGTTTTTGATAACGTTCACTGGCTT-TCCG-GTTGA-CACT-TTTT 939
|| || |||| ||||||||||| | | || || | || | || || | | |
Sbjct 1459 TGTCTCGTGGACCAAGTTTTTGAGATCCATCTCTTG-TTGT-CGAATT-AGTA-TCCAAG 1514
Query 940 CTGGGAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGATCTAGATAG- 997
||||||| ||| |||||| | |||||||| |||| ||||||||||| ||||| || |
Sbjct 1515 CTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGA-CGA 1572
Query 998 ATATAAACCGACCGAGACCTGTCGCTACCAAATAGCTCATATTATTGGACAAGATGAATA 1057
||||||| || ||||| |||||| |||||| |||| | ||||| ||||||||||||||
Sbjct 1573 ATATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATA 1632
Query 1058 CTTCAAATCTGTGAATATCGGAGTTGCGCCAAATCTCGGGATATC-GTACAAAGTTGGAT 1116
|||||||||||||||||| || | || || |||||||| | | | | | ||| | ||
Sbjct 1633 CTTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTCGGAAGACCTG-AGAAA-T---AT 1687
Query 1117 TTACTCCGACGGCATACTGT-GTT-CC-ACTTGTGTGCTCTTCATCCTATGTTCCAAGCT 1173
|||| || |||| | | || || ||||||||||||||| | |||||||||||||
Sbjct 1688 G--CTCC-ACA-CATA-TATTGTCGCCCACTTGTGTGCTCTTC-T--TATGTTCCAAGCT 1739
Query 1174 TAGTTCAACTACAAATCAACAAACCAGGCAAAAGGAAAGAAAG 1216
|||| | || ||||||||| |||||| || ||||||||||||
Sbjct 1740 TAGTGCCGCTCCAAATCAACCAACCAGACACAAGGAAAGAAAG 1782
> AT1G11806.1 | Symbols: | pseudogene, hypothetical protein, likely
a tandem duplication of the immediatly downstream hypothetical
protein which has since degenerated. | chr1:3988346-3989398
FORWARD LENGTH=1053
Length=1053
Score = 95.3 bits (51), Expect = 1e-18
Identities = 106/132 (80%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 697 TACTTTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCCTCTGCCACTGCCGTTTCAC 755
|||| |||||||||||||| | | || || |||||||||| ||| || || |||||||||
Sbjct 576 TACTCTGTTTTGATTTTAC-ATCAGAAAGGTTTGGACCGCGTCTTCCTCTTCCGTTTCAC 634
Query 756 TCTTA-CAATGCAGA-AATTTTTGTCTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCTA 813
|| || ||| ||| | | | ||| | |||||||| | || ||||||||||||||||
Sbjct 635 TC-TAGTGATGAAGAGACTGTGACTCTATATATCTTGTATCAGAGAAGAGCAGCTCGCTA 693
Query 814 TGTTATATCAAC 825
||||||||||||
Sbjct 694 TGTTATATCAAC 705
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 76.8 bits (41), Expect = 5e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 702 TGTTTTGATTTTACAAGCGAGAGATTTGGACCGCCTCTGCCACTGCCGTT 751
|||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 710 TGTTTTGATTTTACAAGCGAGAGATTTGGACCGCTTCTGCCTCTACCGTT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5