BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929127
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acc... 966 0.0
AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4 |... 632 1e-180
AT3G13700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 632 1e-180
> AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acceptor)
family protein | chr3:4495019-4495956 REVERSE LENGTH=938
Length=938
Score = 966 bits (523), Expect = 0.0
Identities = 579/607 (95%), Gaps = 0/607 (0%)
Strand=Plus/Plus
Query 1 ACCATAACGCGATATTACTAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCAT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ACCATAACCCGATATTACTAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCAT 228
Query 61 CTCCGGTGGTGGATCTTGAGTCCCTCTCACGCGCCAAGCACCGTATCAAAGCCGGACTAG 120
||||| |||||||| | ||||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 229 CTCCGTTGGTGGATGTCGAGTCTCTCTCACGCGCTAAACACCGTATCAAAGCCGGGCTAG 288
Query 121 CCACGCGCCGTCCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCG 180
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 289 CCACGCGCCGTGCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTGCCTCACGGTG 348
Query 181 TCTCCGATGCTTTCGCAAGAATCAAGACCAATCTTGCTTACTTCCGTATGAACTACGCAG 240
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TCTCCGATGCGTTCACAAGAATCAAGACCAATCTTGCTTACTTCCGTATGAACTACGCAA 408
Query 241 TCGTTGTCTTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 409 TCGTTGTCTTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTCT 468
Query 301 TCACCGTCTTGGTCGCTGTTTGGATCTTTCTTTATTTTCTCCGTGATGAGCCTATCAAGC 360
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 469 TCACCGTCTTGGTCGTTGTTTGGATCTTTCTGTATTTTCTCCGTGATGAGCCTATCAAGC 528
Query 361 TGTTCCGATATCAGATCGATGATCGGACGGTCTTGATTGTTTTATCGGTGTTAACCGTCG 420
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGTTCCGGTTTCAGATCGATGATCGGACGGTCTTGATTGTTTTATCGGTGTTAACCGTCG 588
Query 421 TTCTACTTTTGTTGACCAACGCGACGTTTAATATTGTTGGAGCGCTTGTGACCGGAGCTG 480
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TTTTACTCCTGTTGACCAACGCGACGTTTAATATTGTTGGAGCGCTTGTGACCGGAGCTG 648
Query 481 TGTTGGTTTTGATACATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAG 540
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGTTGGTTTTGATCCATTCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAG 708
Query 541 CGGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATGGATTGATCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 709 CGGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATCGTTTCATCTC 768
Query 601 GAACTTT 607
||| |||
Sbjct 769 GAAATTT 775
> AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4
| chr3:4490628-4493831 REVERSE LENGTH=2294
Length=2294
Score = 632 bits (342), Expect = 1e-180
Identities = 517/599 (86%), Gaps = 21/599 (4%)
Strand=Plus/Plus
Query 13 TATT-ACTAATGACGAACTACGGTGCGATT-CCGACGTCGTCTCATGCATCTCCGGTGGT 70
|||| ||||||| ||||| ||| | |||| || |||||||||||||||||||||| ||
Sbjct 265 TATTCACTAATGGCGAACAACGACGAGATTACC-ACGTCGTCTCATGCATCTCCGGCAGT 323
Query 71 GGATCTTGAGTCCCTCTCACGCGCCAAGCACCGTATCAAAGCCGGACTAGCCACGCGCCG 130
| ||| ||||| |||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 324 GAATCACGAGTCTATCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCG 383
Query 131 -TCCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATG 189
||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 384 CTCC-TGGAGGGTGATGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATG 442
Query 190 CTTTCGCAAGAATCAAGACCAATCTTGCTTACTTCCGTATG-AACTACGCAGTCGTTGTC 248
|||| ||||||||||||| ||||||||||||||||||| | || |||||| |||| ||
Sbjct 443 TTTTCTCAAGAATCAAGACAAATCTTGCTTACTTCCGTA-GTAATTACGCAATCGTAATC 501
Query 249 TTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGT-TTTCACC-G 306
|||| ||| || |||||||||||||| ||||||||||| ||||||||||| ||| ||| |
Sbjct 502 TTGAACGTCATATTCTTCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTT-ACCGG 560
Query 307 TCTTGG-TCGCTGTTTGGATCTTTCTTTATTTTCTCCGTGATGAGCCTATCAAGCTGTTC 365
| |||| | | | |||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 561 T-TTGGTTTTC-CTATGGATCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTC 618
Query 366 CGATATCAGATCGATGATCG-GACGGTCTTGATTGTTTTATCGGTG-TTAACCGTCGTTC 423
| | ||| ||||| ||||| | |||||||||||| | |||||||| || ||| ||||||
Sbjct 619 AGGTTTCAAATCGACGATCGTG-CGGTCTTGATTGGTCTATCGGTGATT-ACCATCGTTC 676
Query 424 TACTTTTGTTGACCAACGCGACGTTTAATATTGTTG-GAGCGCTTG-TGACCGGAGCTGT 481
||||| | |||||||||||||||||||||||||||| | ||| ||| || ||||||||||
Sbjct 677 TACTTCTATTGACCAACGCGACGTTTAATATTGTTGCG-GCG-TTGATGGCCGGAGCTGT 734
Query 482 GTTGGTTTTGATACATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGC 541
||||||| |||| ||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 735 GTTGGTTCTGATCCATGCGGTGATTAGGAAGACGGATGATCTTTTTTTGGATGAAGAAGC 794
Query 542 GGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATGGATTGATCTC 600
|||||||||||||||||| || ||||||||| |||| ||| |||||| ||||||||||
Sbjct 795 GGCGACGACTGAGACTTCAGGACTGACGTCACACCCTTCGTCTTAAAACGATTGATCTC 853
> AT3G13700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4491008-4493737 REVERSE LENGTH=1996
Length=1996
Score = 632 bits (342), Expect = 1e-180
Identities = 517/599 (86%), Gaps = 21/599 (4%)
Strand=Plus/Plus
Query 13 TATT-ACTAATGACGAACTACGGTGCGATT-CCGACGTCGTCTCATGCATCTCCGGTGGT 70
|||| ||||||| ||||| ||| | |||| || |||||||||||||||||||||| ||
Sbjct 171 TATTCACTAATGGCGAACAACGACGAGATTACC-ACGTCGTCTCATGCATCTCCGGCAGT 229
Query 71 GGATCTTGAGTCCCTCTCACGCGCCAAGCACCGTATCAAAGCCGGACTAGCCACGCGCCG 130
| ||| ||||| |||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 230 GAATCACGAGTCTATCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCG 289
Query 131 -TCCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATG 189
||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 290 CTCC-TGGAGGGTGATGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATG 348
Query 190 CTTTCGCAAGAATCAAGACCAATCTTGCTTACTTCCGTATG-AACTACGCAGTCGTTGTC 248
|||| ||||||||||||| ||||||||||||||||||| | || |||||| |||| ||
Sbjct 349 TTTTCTCAAGAATCAAGACAAATCTTGCTTACTTCCGTA-GTAATTACGCAATCGTAATC 407
Query 249 TTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGT-TTTCACC-G 306
|||| ||| || |||||||||||||| ||||||||||| ||||||||||| ||| ||| |
Sbjct 408 TTGAACGTCATATTCTTCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTT-ACCGG 466
Query 307 TCTTGG-TCGCTGTTTGGATCTTTCTTTATTTTCTCCGTGATGAGCCTATCAAGCTGTTC 365
| |||| | | | |||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 467 T-TTGGTTTTC-CTATGGATCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTC 524
Query 366 CGATATCAGATCGATGATCG-GACGGTCTTGATTGTTTTATCGGTG-TTAACCGTCGTTC 423
| | ||| ||||| ||||| | |||||||||||| | |||||||| || ||| ||||||
Sbjct 525 AGGTTTCAAATCGACGATCGTG-CGGTCTTGATTGGTCTATCGGTGATT-ACCATCGTTC 582
Query 424 TACTTTTGTTGACCAACGCGACGTTTAATATTGTTG-GAGCGCTTG-TGACCGGAGCTGT 481
||||| | |||||||||||||||||||||||||||| | ||| ||| || ||||||||||
Sbjct 583 TACTTCTATTGACCAACGCGACGTTTAATATTGTTGCG-GCG-TTGATGGCCGGAGCTGT 640
Query 482 GTTGGTTTTGATACATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGC 541
||||||| |||| ||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 641 GTTGGTTCTGATCCATGCGGTGATTAGGAAGACGGATGATCTTTTTTTGGATGAAGAAGC 700
Query 542 GGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATGGATTGATCTC 600
|||||||||||||||||| || ||||||||| |||| ||| |||||| ||||||||||
Sbjct 701 GGCGACGACTGAGACTTCAGGACTGACGTCACACCCTTCGTCTTAAAACGATTGATCTC 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5