BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929131
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2955 0.0
AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 54.7 3e-06
> AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:4519647-4521533 FORWARD LENGTH=1887
Length=1887
Score = 2955 bits (1600), Expect = 0.0
Identities = 1797/1892 (95%), Gaps = 13/1892 (1%)
Strand=Plus/Plus
Query 21 ATGTTTAACTTGATGAGACTAATTCATCGATCCTTCTCGTCGTCT-C--CTAACTCTGTT 77
|||||||||||||||||||||||||||||||| |||||||||||| | | |||| ||||
Sbjct 1 ATGTTTAACTTGATGAGACTAATTCATCGATCTTTCTCGTCGTCTCCAACAAACTATGTT 60
Query 78 CTTCAAACC-TTCCGTCCAATCTCTCAACTATGTTCCAACGGTCGTCTTCAAGAAGCTTT 136
||||||||| || | ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 CTTCAAACCATT-CTTCCAATCTCTCAATTATGCTCCAACGGTCGTCTTCAAGAAGCTTT 119
Query 137 ACTAGAGATGGTGATGTTAGGTCCGGAGATTGGGTTCCATTGTTACGATGCTTTGTTGAA 196
||| ||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 120 ACTGGAGATGGCGATGTTAGGTCCCGAGATGGGGTTCCATGGTTACGATGCTTTGTTGAA 179
Query 197 TGCGTGTTTAGACAAAAGGGCTCTTAGAGAAGGTCAGAGAGTTCATGCCCACATGATCAA 256
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 180 TGCGTGTTTGGACAAAAGGGCTCTTAGAGATGGTCAAAGAGTTCATGCCCACATGATCAA 239
Query 257 AACCCGTTATCTT-CCAGCTACTTATCTTCGAACTCGTCTGCTTGTCTTCTATGGTAAAT 315
|||||||||| || || || ||||| || ||||||||||||||| |||||||||||||||
Sbjct 240 AACCCGTTAT-TTACCCGCCACTTACCTCCGAACTCGTCTGCTTATCTTCTATGGTAAAT 298
Query 316 GTGATTGTTTGGAGGATGCACAGAAAGTGCTCGACGAAATGCCTGAGAAGAATGTCGTTT 375
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTGATTGTTTAGAGGATGCACGGAAAGTGCTCGACGAAATGCCTGAGAAGAATGTCGTTT 358
Query 376 CCTGGACTGCTATGATCTCGCGTTATTCTCAAACTGGGCATTCTTCTGAGGCTCTCTCTG 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 CCTGGACTGCTATGATCTCGCGTTATTCTCAAACTGGGCATTCTTCTGAGGCTCTCACTG 418
Query 436 TTTTTGCAGAGATGATGAGATCAGATGGGAAACCAAATGAGTTCACTTTCGCTACTGTTC 495
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTTTTGCAGAGATGATGAGATCAGATGGGAAACCGAATGAGTTCACTTTCGCTACTGTTC 478
Query 496 TTACTTCTTGTATACGTGCTTCTGGATTAGCTCTTGGTAAACAAATCCATGGACTCATAG 555
||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 479 TTACTTCTTGTATACGTGCTTCTGGGTTAGGTCTTGGTAAGCAAATCCATGGACTCATAG 538
Query 556 TTAAGTGGAATTACGATTCTCACATTTTTGTTGGGAGCTCTCTTCTTGACATGTATGCCA 615
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 539 TTAAGTGGAATTACGATTCTCATATTTTTGTTGGAAGCTCTCTTCTTGACATGTATGCTA 598
Query 616 AAGCTGGTCAAATTGAAGAAGCTCGCGAGATTTTCGAGTGCTTGCCTGAGAGAGATGTTG 675
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 599 AAGCTGGTCAAATTAAAGAAGCTCGTGAGATTTTCGAGTGTTTGCCTGAGAGAGATGTTG 658
Query 676 TTTCATGTACTGCTATTATTGCTGGATATGCCCAGTTAGGTCTTGATGAAGAAGCATTAG 735
| ||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||
Sbjct 659 TCTCATGTACTGCTATTATTGCTGGTTATGCCCAACTAGGTCTTGATGAAGAGGCGTTAG 718
Query 736 AGATGTTTCAGAGACTGCAGAGTGAAGGAATGCGTCCCAATTATGTTACCTACGCTAGTC 795
|||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 719 AGATGTTTCATAGACTGCATAGTGAAGGAATGAGTCCCAATTATGTTACCTATGCTAGTC 778
Query 796 TTTTAACAGCATTATCTGGACTTGCTTTGTTAGATCATGGCAAGCAAGCTCATTGCCATG 855
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 TTTTGACAGCATTATCTGGACTTGCTTTGCTAGATCATGGCAAGCAAGCTCATTGCCATG 838
Query 856 TCTTGAGACGTGAACTTCCGTTCTATGCGGTCCTTCAGAATTCTCTTATTGATATGTACT 915
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 839 TCTTGAGACGTGAACTTCCGTTTTACGCGGTCCTTCAGAATTCTCTTATTGATATGTACT 898
Query 916 CAAAATGTGGGAATCTCTCTTACGCTCA-AAGGCTTTTTGATAACATGCCTGAAAGGACA 974
|||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 899 CAAAATGTGGGAATCTTTCTTACGCT-AGAAGGCTTTTTGATAACATGCCTGAGAGGACA 957
Query 975 GCGATTTCATGGAACGCGATGCTTGTGGGATATAGTAAACATGGTTTAGGAAGAGAAGTT 1034
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 GCGATTTCATGGAATGCGATGCTTGTGGGATATAGTAAACATGGGTTAGGAAGAGAAGTT 1017
Query 1035 CTTGAGCTGTTCAGATTGATGAGAGATGAGAAGAGAGTAAAGCCTGATGCAGTAACCCTT 1094
||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 CTTGAACTTTTTAGATTGATGAGAGATGAGAAGAGAGTAAAGCCTGATGCAGTTACCCTT 1077
Query 1095 TTGGCTGTCTTGTCTGGTTGCAGCCATGGAAGGATGGAAGACACAGGGCT-AAGTATATT 1153
|||||||| |||||||||||||||||||| || ||||||||||||||| | || ||||||
Sbjct 1078 TTGGCTGTTTTGTCTGGTTGCAGCCATGGGAGAATGGAAGACACAGGGTTGAA-TATATT 1136
Query 1154 TGATGGCATGGTAGCGGGAGAATACGGGA-TAAAGCCTGACACTGAGCATTATGGTTGCA 1212
||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 1137 TGATGGCATGGTAGCGGGAGAATACGGGACT-AAGCCTGGCACTGAGCATTATGGTTGCA 1195
Query 1213 TCGTTGATATGCTTGGCCGTGCGGGTAGGATTGATGAGGCATTTGAATTCATCAAAAGAA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCGTTGATATGCTTGGCCGTGCGGGTAGGATTGATGAGGCATTTGAATTCATCAAAAGAA 1255
Query 1273 TGCCATCTAAACCAACTGCTGGTGTCTTGGGTTCCCTTTTAGGAGCTTGTAGGGTTCACT 1332
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 TGCCATCTAAACCAACTGCTGGTGTCTTGGGTTCCCTTTTAGGAGCATGTAGGGTTCACT 1315
Query 1333 TATCTGTAGATATTGGCGAATATGTAGGGCATAGACTCATTGAGATTGAACCAGAGAATG 1392
||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1316 TATCTGTGGATATTGGCGAATCTGTAGGTCGCAGACTCATTGAGATTGAACCAGAGAATG 1375
Query 1393 CAGGGAACTACGTCGTTCTCTCTAATTTGTATGCTTCTGCAGGAAGATGGGAAGATGTAA 1452
|||||||||| ||| | |||||||||||||||||||| || |||||||||| ||||||||
Sbjct 1376 CAGGGAACTATGTCATCCTCTCTAATTTGTATGCTTCGGCTGGAAGATGGGCAGATGTAA 1435
Query 1453 ACAATGTAAGAGCTATGATGATGCAGAAAGCTGTTACAAAAGAACCAGGAAGAAGCTGGA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACAATGTAAGAGCTATGATGATGCAGAAAGCTGTTACAAAAGAACCAGGAAGAAGCTGGA 1495
Query 1513 TTCAACACGAGCAAACCTTGCATTACTTCCACGCCAATGATCGTACCCATCCAAGAAGGG 1572
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTCAACACGAGCAAACCTTACATTACTTCCACGCCAATGATCGTACCCATCCAAGAAGGG 1555
Query 1573 AAGAAGTGTTAGCTAAAATGAAAGAAATATCGATAAAAATGAAGCAAGCTGGTTATGTTC 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AAGAAGTGTTAGCTAAAATGAAAGAAATATCGATAAAAATGAAGCAAGCTGGTTATGTTC 1615
Query 1633 CTGATCTTAGCTGTGTGCTATATGATGTGGATGAAGAGCAGAAGGAGAAGATGCTACTTG 1692
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1616 CTGATCTTAGCTGTGTGCTATATGATGTGGATGAAGAGCAGAAGGAGAAAATGCTACTTG 1675
Query 1693 GCCACAGTGAGAAACTAGCCTTGACTTTTGGGTTGATTACTACTGGTGAAGGGATTCCAA 1752
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1676 GCCACAGTGAGAAACTAGCCTTGACTTTTGGTTTGATTGCTACTGGTGAAGGGATTCCAA 1735
Query 1753 TTAGAGTTTTCAAGAATCTACGTATATGTGTTGATTGTCATAACTTTGCCAAGATCTTCT 1812
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1736 TTAGAGTTTTCAAGAATCTACGTATATGCGTTGATTGTCATAACTTCGCCAAGATCTTCT 1795
Query 1813 CAAAGGTTTTTGAAAGGGAAGTGTCATTAAGGGATAAAAACAGGTTCCATCAAATTGTCA 1872
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1796 CAAAGGTTTTTGAAAGAGAAGTGTCATTAAGGGATAAAAACAGGTTTCATCAAATTGTCG 1855
Query 1873 AAGGAATATGTTCGTGCGGAGATTACTGGTGA 1904
| ||||||||||| ||||||||||||||||||
Sbjct 1856 ATGGAATATGTTCATGCGGAGATTACTGGTGA 1887
> AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10496228-10498192 FORWARD LENGTH=1965
Length=1965
Score = 54.7 bits (29), Expect = 3e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 894 AATTCTCTTATTGATATGTACTCAAAATGTGG 925
||| ||||||||||||||||||||||||||||
Sbjct 1189 AATGCTCTTATTGATATGTACTCAAAATGTGG 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5