BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929135
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13780.1 | Symbols: | SMAD/FHA domain-containing protein |... 1232 0.0
> AT3G13780.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:4525072-4526214 FORWARD LENGTH=966
Length=966
Score = 1232 bits (667), Expect = 0.0
Identities = 838/917 (91%), Gaps = 25/917 (3%)
Strand=Plus/Plus
Query 1 TCTCTGTGAAAGTCAAGAAAGCAGCATGGAAATCGAAGGCGAAGACGGCACGAAGCTCTT 60
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 51 TCTCTGTGAAAGTGAAGAAACCACCATGGAAATCGAAGGCGAAGACGGCACGAAGCTCTT 110
Query 61 CCTGAAGGCCAGAGTTAAGGCTGTATTCGGAAGAGGAGCGGGATTCAACACCGAAGACCT 120
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 111 CCTGAAGACCGGAGTTAAGGATGTATTCGGAAGAGGAGCGGGATTCAACACCGAAGACCT 170
Query 121 AACAGTGTCACGCCGCCACGTTTCACTCGAATTCAAACCCTCCGCCGCCGGAACCGAACG 180
|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 171 AACAGTGTCACGCCGCCATGTTTCACTCGTATTCAAACCCGCCGCCGCCGGAACCGAACC 230
Query 181 GTCCGATACGGTTTCCTTCGAGGTTCTCGGGAGGAATCCAGTCTGGGTAA-TTCCGGGTG 239
|||||||| ||||||||||||||||||||||||||||||||||||| ||| || | ||
Sbjct 231 GTCCGATATGGTTTCCTTCGAGGTTCTCGGGAGGAATCCAGTCTGGATAAGGGCC-GTTG 289
Query 240 AAACGGGCAAAAAGATTCAAACTTTGAGGAAATCGGGGACAGGAGAAATCGCCGCCGGCG 299
||| |||||||||||||||||||||||||||| | | ||| |||||||||||| ||||||
Sbjct 290 AAAAGGGCAAAAAGATTCAAACTTTGAGGAAACCCGAGACTGGAGAAATCGCCACCGGCG 349
Query 300 ATCGATTTTGTGTATCGGGTAATCTCCCAATTTGGTTCACTTTGAAGAGACGCGATGAAG 359
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 350 ATCAATTTTGTGTATCGGGTAATCACCCCATTTGGTTCACTTTGAAGAGACGCGATGAAG 409
Query 360 TTATGGAGGAGAGAGCATTGG--C-TGGTGAAATCGAATTGGATATTGATCCTGTTAAAG 416
||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 410 TTATGGAGGAGCGAGCATTGGATCATGGTGAAATCGAATTGAATATTGATCCTGTTAAAG 469
Query 417 AGTTTGGATTTCTTGTGATTGGGAAAGAATTTGATCAGTATCCAAAGAGTAGGGTGCGTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGTTTGGATTTCTTGTGATTGGGAAAGAATTTGATCAGTATCCAAAGAGTAGGGTGCGTG 529
Query 477 ACATAAAGCAATGGGAATGGTTTTTAGAGGATTCCACTAATGGAAATAGTGATGATGATG 536
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 530 ACATAAAGCAATGGGAATGGTTTTTAGAGGATTCCACTAATGGAAATAGCGATGGTGATG 589
Query 537 AAGATGGAGATAAGAAGGTGA-GGAAGGGATTAGGCAAAAAGAGAGGAAGGAAGAACGGG 595
|||||||||||||||||| || ||||||||||||| ||||||||| |||||||||| |||
Sbjct 590 AAGATGGAGATAAGAAGG-GAAGGAAGGGATTAGGGAAAAAGAGAAGAAGGAAGAAAGGG 648
Query 596 AATGAGGACGACGATTGGAGTGTGGAAAGTGATGAAGATAAAGAGTTAATGGTGAAATCG 655
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 649 AATGAGGATGATGATTGGAGTGTGGAAAGTGATGAAGATAAAGAGTTGATGGTGAAATCA 708
Query 656 AAAAGAGTTGTGACTCCCACTTACTCAACTAGATCCAAGAAGACGAAGAAAGATACAAAC 715
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 709 AAAAGAGTTGTGACTCCTACTTACTCGACTAGATCCAAGAAGACGAAGAAAGATTCAAAC 768
Query 716 GCAAGTAGTAGTTGTAGC---GGTGCTCAAACTAAACAACGAGGAAGAGTAGATGTCGA- 771
|| ||||||||| |||| ||||||||||||||||| || ||||||| |||||||||
Sbjct 769 GCTAGTAGTAGTAGTAGTAATGGTGCTCAAACTAAACAGCGTGGAAGAGCAGATGTCGAG 828
Query 772 -A-GA---TGATGATGATGAAACATTGGGCGGTTTCATTGTTAGtgatgaagaagccaat 826
| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 829 GAAGAAGATGATGATGATGAAACATTGGGAGGTTTCATTGTTAGTGATGAAGAAGCTAAG 888
Query 827 ttagaagaaga-g--gatgaatcagat-a-t-agatg-a--tgatgaagaagatgaagac 877
||||||||||| | || ||| ||| | | ||||| | |||||||||||||||||||
Sbjct 889 TTAGAAGAAGAAGAAGAAGAAGAAGACGAATCAGATGTAGATGATGAAGAAGATGAAGAC 948
Query 878 gaagaCGAGGAATAATA 894
||||| || ||| ||||
Sbjct 949 GAAGAAGAAGAAGAATA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5