BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929143
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13624.1 | Symbols: | pseudogene, hypothetical protein | ch... 252 7e-66
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 69.4 8e-11
> AT3G13624.1 | Symbols: | pseudogene, hypothetical protein |
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792
Score = 252 bits (136), Expect = 7e-66
Identities = 505/672 (75%), Gaps = 70/672 (10%)
Strand=Plus/Plus
Query 530 ATTTTAGCTCTAATTCATG-GAG-GTTTGTTGATCATAAAC--CCGAGTGGTTTATATGG 585
||||| | ||||||||||| || | || |||||| | || |||| |||| |||| ||
Sbjct 1122 ATTTTCGTTCTAATTCATGAAAGAG-TT-TTGATC-T-CACTTCCGACTGGTATATAGGG 1177
Query 586 TCTCATCAACGTGGTGTGTCTTTGAAAGGAAATAC-T-TATTTTGCTGCTAAAAAGAAAA 643
||| || ||||||| |||||||| || |||||||| | || ||| ||| || |||||
Sbjct 1178 TCTAATAAACGTGGCGTGTCTTTCAAGGGAAATACATACATCTTG--GCTCAAGGGAAAA 1235
Query 644 CAACAGTTGG-T-G--GATGGAAGATTGAAGATATCTTACTCT-GTTTTGATTTCACAAC 698
|| || ||| | | ||||||||||||| | ||| ||||||| | |||||||| |||||
Sbjct 1236 TAAGAG-TGGATAGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAAC 1293
Query 699 AGAGAGATTTGGACCG-AGTCTGCATCTTCCATTTTGCTCTGATGATGCAAAAGACAATG 757
||||||||||||||| || |||| ||||| ||| ||| | || || || |||| ||
Sbjct 1294 TGAGAGATTTGGACCGCGGT-TGCAGCTTCCGTTTGGCTTTTATTATCCACAAGA-TTTG 1351
Query 758 TT-GCTTTATCTTGTGTTAGAGATGAGCAGCTCGCCGTGTTACATCAATA-CAAGGATAT 815
|| ||||||||||||| ||||| |||||||||| || ||||||||| | | ||||
Sbjct 1352 TTCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCGTGGTATTACATCAA-AGC-TGGATGG 1409
Query 816 TTGTCT-GATAA-TGGATATTTGGGTTACGAATAAGATTGATCCCAATGCAGTGTCGTGG 873
|| ||| | || |||| |||||| |||||||||||||||||||| || || ||||||
Sbjct 1410 TT-TCTGGCGAACTGGAGATTTGGATTACGAATAAGATTGATCCCGGTGTTGTCTCGTGG 1468
Query 874 AACAAGTTTTTGAGA--AAGTGGGCTGGTTATCCG-GTTGA-CACT-GAAGGTGGGAGTT 928
| ||||||||||||| | | || ||| | || || | | | ||| ||||||||
Sbjct 1469 ACCAAGTTTTTGAGATCCA-T-CTCTTGTTGT-CGAATT-AGTA-TCCAAGCTGGGAGTT 1523
Query 929 TCTTCATTGACGAGGAGAAT-AATGTTGCTGTGGTTTTCGATCTAGACCAAAT-TAAACC 986
|||||||| ||||||||||| || || ||||||||||||||||| || | ||| ||||
Sbjct 1524 TCTTCATTAACGAGGAGAATCAA-GTGGCTGTGGTTTTCGATCTTGA-CGAATATAAAGG 1581
Query 987 G-GT----CATG--G---CC--TCAGCTCACCTTGTTGGAC-AGA-G-GTACTTCAAATC 1031
| || |||| | || ||||| || || | |||| ||| | |||||||||||
Sbjct 1582 GAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTCAAATC 1641
Query 1032 TGTGAATATCGGAAAAGTTCTTAATATCGTCGAAG--TTGACAAGTTTGGATTTTTTA-A 1088
||||||||| || | | || ||| ||| |||| ||| || | || | | |
Sbjct 1642 TGTGAATATTGGGGAGGCTCCGAATCTCG--GAAGACCTGAGAA--AT--ATGCTCCACA 1695
Query 1089 GGTGAATTATCGTCTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCCACTGca 1148
| | ||| ||| |||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1696 CAT--A-TATTGTCGCCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGTGCCGCTCCA 1752
Query 1149 aatcaaccaacc 1160
||||||||||||
Sbjct 1753 AATCAACCAACC 1764
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 69.4 bits (37), Expect = 8e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1107 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCCACTGcaa 1149
||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1990 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCAACTACAA 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5