BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929144
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13800.1 | Symbols: | Metallo-hydrolase/oxidoreductase supe... 1869 0.0
> AT3G13800.1 | Symbols: | Metallo-hydrolase/oxidoreductase superfamily
protein | chr3:4538821-4541487 FORWARD LENGTH=1265
Length=1265
Score = 1869 bits (1012), Expect = 0.0
Identities = 1090/1127 (97%), Gaps = 7/1127 (1%)
Strand=Plus/Plus
Query 4 TCCGAGATTCAGGAATTGGTAATGGCGGCTATGTCAGCGGTTCTGTCTCTGGGTTTAGGA 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 TCCGAGATTCAGGAATTGGTAATGGCGGCTATGTCAGCGGTTCTGTCTCTGGGTTTAGGA 97
Query 64 ACACTCCGCCCTTCGCATCGTTCCTTGTCCTGTTTCGATTCTCTCCGGCACCA---GACA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 98 ACACTCCGCCCTTCGCATCGTTCCTTGTCCTGTTTCGATTCCCTCCGGCACCACCAGACA 157
Query 121 TCTTTTCTCCGTTGCCACCAAAGTCTCATCTCTAGAAATACGA--AG-TCTCCGCTCAAC 177
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 158 TCTTTTCTCCGTTGCCACCAAAGTCTCATCTCTAGAAATACGACGAGGTCTCCGCTCAAC 217
Query 178 AAGATTCTTCAGGCTTGCCTTCAATCCAACTATGCAAATGCTGATGCTTTGGTGTCATCA 237
||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 218 AAGATTCTTCAGGCTTGCCTTCAATCCAATTCTGCAAATGGTGATGCTTTGGTGTCATCA 277
Query 238 TCCGATGAAAGTTCTGAGATTGTATTTATGGGTACCGGAACAAGTGAAGGGATTCCTCGT 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 278 TCCGATGAAAGTTCTGAGATTGTATTTATGGGTACCGGAACCAGTGAAGGGATTCCTCGT 337
Query 298 GTTAGCTGCCTCACTAATCCTTTGAAAACATGTTCGGTATGCACAAAAGCAACAGAACCA 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GTCAGCTGCCTCACTAATCCTTTGAAAACATGTTCGGTATGCACAAAAGCAACAGAACCA 397
Query 358 GGAAACAAAAATAGGAGACTTAACACCAGCATTCTTGTACGGTACATTAGACCATCAGGA 417
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 398 GGAAACAGAAATAGGAGACTTAACACCAGCATTCTTGTTCGGTACATTAGACCATCCGGA 457
Query 418 ACAAGTAACATCCTCATTGATTGTGGCAAGTTCTTCTACCAGAGTGCCCTTCGATGGTTT 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 458 ACAAGTAACATCCTCATTGATTGTGGCAAGTTCTTCTACCATAGTGCCCTTCGATGGTTT 517
Query 478 CCCACCTTCGGGCTAAGAACACTTGATGCAGTTGTAATTACTCATTCTCATGCTGACGCA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CCCACCTTCGGGCTAAGAACACTTGATGCAGTTGTAATTACTCATTCTCATGCTGACGCA 577
Query 538 ATTGGAGGTCTTGATGATCTCCGTGATTGGACAAACAATGTTCAACCTCACATTCCAATT 597
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 578 ATTGGAGGTCTTGATGATCTTCGTGATTGGACAAACAATGTCCAACCTCACATTCCAATT 637
Query 598 TACACTGCTATGCGTGATCTCGAGGTGATGAAGAAGACCCATTATTACTTGGTTGATACA 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TACACTGCTATACGTGATCTCGAGGTGATGAAGAAGACCCATTATTACTTGGTTGATACA 697
Query 658 AGTGTCATCATACCCGGAGCTGCAGTCTCAGAGTTGGAGTTTAAAATCATACACGAGGAC 717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 698 AGTGTCATCATACCCGGAGCTGCAGTCTCAGAGTTGGAGTTTAAAGTCATACACGAGGAC 757
Query 718 CAACCATTTGTGGTAAACGATCTAAAGATCACCCCATTACCTGTATGGCATGGAAGTAAC 777
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 758 CAGCCATTTGTGGTAAACGATCTGAAGATCACCCCATTACCTGTATGGCATGGAAGTAAC 817
Query 778 TACCGTTCCCTTGGTTTCCGATTTGGTAACGTCTGCTACATAAGCGATGTCAGTGACATA 837
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 818 TACCGTTCCCTTGGTTTCCGCTTTGGTAATGTCTGCTACATAAGCGATGTCAGTGACATA 877
Query 838 CCGGAAGAAACCTACCCACTCCTTAAAGACTGTGATCTCCTAATTATGGATGCTTTGAGG 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CCGGAAGAAACCTACCCGCTCCTTAAAGACTGTGATCTCCTAATTATGGATGCTTTGAGG 937
Query 898 CCTGACCGGTCTTCAGCAACACACTTTGGCCTCCCAAGAGCGTTGGAGGAAGTTCGGAAA 957
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 938 CCTGACCGGTCTTCAGCAACACACTTTGGCCTCCCAAGGGCGTTAGAGGAAGTTCGGAAA 997
Query 958 ATCAAACCAAAAAGAACTCTTTTCACCGGAATGATGCACTTGATGGACCACGAGAAGGTG 1017
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 998 ATCAAACCAAAAAGAACCCTTTTCACCGGAATGATGCATTTGATGGACCACGAGAAGGTG 1057
Query 1018 AGCGAAGAACTAGAGAAAATTAGGGACACAGAAGGCCTCGATGTCCAATTGAGTTACGAT 1077
||||||||||| |||||| ||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1058 AGCGAAGAACTGGAGAAACTTAGGAACACAGAAGGCCTCGATGTCCAACTGAGCTACGAT 1117
Query 1078 GGTCTTCGTGTTCCAATCTCAATTTAACTCGGTTTATTCGTATTTTT 1124
||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1118 GGTCTTCGTGTACCAATCTCAATTTAACTCGGTTTATTCCT-TTTTT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5